How can fertilization regimes and durations shape earthworm gut microbiota in a long-term field experiment?

Effects of Earthworms on the Microbiomes and Antibiotic Resistomes of Detritus Fauna and Phyllospheres

(2020) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The driving factors of nematode gut microbiota under long-term fertilization

(2020) Fei Zheng et al.   FEMS MICROBIOLOGY ECOLOGY

Fates of Antibiotic Resistance Genes in the Gut Microbiome from Different Soil Fauna under Long-Term Fertilization

(2020) Fei Zheng et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils

(2019) Zhi-Bo Zhao et al.   Microbiome

Global impacts of future cropland expansion and intensification on agricultural markets and biodiversity

(2019) Florian Zabel et al.   Nature Communications

Earthworms Coordinate Soil Biota to Improve Multiple Ecosystem Functions

(2019) Ting Liu et al.   CURRENT BIOLOGY

Challenges and Opportunities for Soil Biodiversity in the Anthropocene

(2019) Stefan Geisen et al.   CURRENT BIOLOGY

Global distribution of earthworm diversity

(2019) Helen R. P. Phillips et al.   SCIENCE

Antibiotics Disturb the Microbiome and Increase the Incidence of Resistance Genes in the Gut of a Common Soil Collembolan

(2018) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial community assembly in wild populations of the fruit fly Drosophila melanogaster

(2018) Karen L. Adair et al.   ISME Journal

Feeding behaviour of epi-anecic earthworm species and their impacts on soil microbial communities

(2018) Kevin Hoeffner et al.   SOIL BIOLOGY & BIOCHEMISTRY

QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling

(2018) Bangxiao Zheng et al.   Science China-Life Sciences

Effects of long-term fertilization on the associated microbiota of soil collembolan

(2018) Jing Ding et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial nutrient niches in the gut

(2017) Fátima C. Pereira et al.   ENVIRONMENTAL MICROBIOLOGY

Soil: Restore earthworms to rebuild topsoil

(2017) Robert Blakemore et al.   NATURE

Future threats to biodiversity and pathways to their prevention

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A comparative study of gut microbiota profiles of earthworms fed in three different substrates

(2017) Dianfeng Liu et al.   SYMBIOSIS

Continental-scale pollution of estuaries with antibiotic resistance genes

(2017) Yong-Guan Zhu et al.   Nature Microbiology

Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments

(2016) Maureen Berg et al.   ISME Journal

Insight into how organic amendments can shape the soil microbiome in long-term field experiments as revealed by network analysis

(2016) Ning Ling et al.   SOIL BIOLOGY & BIOCHEMISTRY

Amphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions

(2016) Molly C. Bletz et al.   Nature Communications

Genetic and functional characterization of an extracellular modular GH6 endo-β-1,4-glucanase from an earthworm symbiont, Cellulosimicrobium funkei HY-13

(2015) Do Young Kim et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Taxonomic and functional annotation of gut bacterial communities of Eisenia foetida and Perionyx excavatus

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Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

(2015) Armin Erlacher et al.   Frontiers in Microbiology

Immune-directed support of rich microbial communities in the gut has ancient roots

(2014) Larry J. Dishaw et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)

(2014) Daniel I. Bolnick et al.   ECOLOGY LETTERS

The effect of anthropogenic arsenic contamination on the earthworm microbiome

(2014) Daniel Antony Pass et al.   ENVIRONMENTAL MICROBIOLOGY

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Soil biodiversity and soil community composition determine ecosystem multifunctionality

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A review of earthworm impact on soil function and ecosystem services

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Gut Microflora and Microfauna of Earthworm Species in the Soils of the Research Farms of the University of Agriculture, Abeokuta, Nigeria

(2012) A. B. Idowu et al.   BIOLOGICAL AGRICULTURE & HORTICULTURE

Emission of nitrous oxide and dinitrogen by diverse earthworm families from Brazil and resolution of associated denitrifying and nitrate-dissimilating taxa

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Earthworms as modifiers of the structure and biological activity of humic acids

(2011) V. V. Tikhonov et al.   BIOLOGY BULLETIN

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Biochar induced soil microbial community change: Implications for biogeochemical cycling of carbon, nitrogen and phosphorus

(2011) Craig R. Anderson et al.   PEDOBIOLOGIA

Epigeic Earthworms Exert a Bottleneck Effect on Microbial Communities through Gut Associated Processes

(2011) María Gómez-Brandón et al.   PLoS One

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(2010) Robert C. Edgar   BIOINFORMATICS

Clostridiaceae and Enterobacteriaceae as active fermenters in earthworm gut content

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QIIME allows analysis of high-throughput community sequencing data

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In Situ Hydrogen and Nitrous Oxide as Indicators of Concomitant Fermentation and Denitrification in the Alimentary Canal of the Earthworm Lumbricus terrestris

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

‘CandidatusLumbricincola’, a novel lineage of unculturedMollicutesfrom earthworms of familyLumbricidae

(2009) Taras Y. Nechitaylo et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluation of Intracellular Polyphosphate Dynamics in Enhanced Biological Phosphorus Removal Process using Raman Microscopy

(2009) Nehreen Majed et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Gut wall bacteria of earthworms: a natural selection process

(2009) Dwipendra Thakuria et al.   ISME Journal

Effect of the Earthworms Lumbricus terrestris and Aporrectodea caliginosa on Bacterial Diversity in Soil

(2009) Taras Y. Nechitaylo et al.   MICROBIAL ECOLOGY

Diet-related composition of the gut microbiota of Lumbricus rubellus as revealed by a molecular fingerprinting technique and cloning

(2009) B.A. Knapp et al.   SOIL BIOLOGY & BIOCHEMISTRY

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY