GMNN2CD: identification of circRNA–disease associations based on variational inference and graph Markov neural networks

sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks

(2021) Mengting Niu et al.   PLANT MOLECULAR BIOLOGY

A representation learning model based on variational inference and graph autoencoder for predicting lncRNA-disease associations

(2021) Zhuangwei Shi et al.   BMC BIOINFORMATICS

NSL2CD: identifying potential circRNA–disease associations based on network embedding and subspace learning

(2021) Qiu Xiao et al.   BRIEFINGS IN BIOINFORMATICS

rBPDL:Predicting RNA-Binding Proteins Using Deep Learning

(2021) Mengting Niu et al.   IEEE Journal of Biomedical and Health Informatics

SgRNA-RF: Identification of SgRNA On-Target Activity With Imbalanced Datasets

(2021) Mengting Niu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

iCDA-CGR: Identification of circRNA-disease associations based on Chaos Game Representation

(2020) Kai Zheng et al.   PLoS Computational Biology

GCNCDA: A new method for predicting circRNA-disease associations based on Graph Convolutional Network Algorithm

(2020) Lei Wang et al.   PLoS Computational Biology

An in-silico method with graph-based multi-label learning for large-scale prediction of circRNA-disease associations

(2020) Qiu Xiao et al.   GENOMICS

Improving circRNA-disease association prediction by sequence and ontology representations with convolutional and recurrent neural networks

(2020) Chengqian Lu et al.   BIOINFORMATICS

A comprehensive survey on computational methods of non-coding RNA and disease association prediction

(2020) Xiujuan Lei et al.   BRIEFINGS IN BIOINFORMATICS

Exploring associations of non-coding RNAs in human diseases via three-matrix factorization with hypergraph-regular terms on center kernel alignment

(2020) Hao Wang et al.   BRIEFINGS IN BIOINFORMATICS

IMS-CDA: Prediction of CircRNA-Disease Associations From the Integration of Multisource Similarity Information With Deep Stacked Autoencoder Model

(2020) Lei Wang et al.   IEEE Transactions on Cybernetics

Circular RNAs as promising biomarkers in cancer: detection, function, and beyond

(2019) Shengli Li et al.   Genome Medicine

CircFunBase: a database for functional circular RNAs

(2019) Xianwen Meng et al.   Database-The Journal of Biological Databases and Curation

Predicting circRNA–Disease Associations Based on Improved Collaboration Filtering Recommendation System With Multiple Data

(2019) Xiujuan Lei et al.   Frontiers in Genetics

Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods

(2019) Xiangxiang Zeng et al.   BRIEFINGS IN BIOINFORMATICS

Computational Prediction of Human Disease- Associated circRNAs Based on Manifold Regularization Learning Framework

(2019) Qiu Xiao et al.   IEEE Journal of Biomedical and Health Informatics

An Efficient Approach based on Multi-sources Information to Predict CircRNA-disease Associations Using Deep Convoltional Neural Network

(2019) Lei Wang et al.   BIOINFORMATICS

CircSMARCA5 Inhibits Migration of Glioblastoma Multiforme Cells by Regulating a Molecular Axis Involving Splicing Factors SRSF1/SRSF3/PTB

(2018) Davide Barbagallo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

circRNA disease: a manually curated database of experimentally supported circRNA-disease associations

(2018) Zheng Zhao et al.   Cell Death & Disease

CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases

(2018) Chunyan Fan et al.   Database-The Journal of Biological Databases and Curation

Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease

(2018) Dongxia Yao et al.   Scientific Reports

DWNN-RLS: regularized least squares method for predicting circRNA-disease associations

(2018) Cheng Yan et al.   BMC BIOINFORMATICS

PWCDA: Path Weighted Method for Predicting circRNA-Disease Associations

(2018) Xiujuan Lei et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1

(2017) Kotb Abdelmohsen et al.   RNA Biology

Identification and characterization of circular RNAs in zebrafish

(2016) Yudong Shen et al.   FEBS LETTERS

CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs

(2015) Dawood B. Dudekula et al.   RNA Biology

An improved interolog mapping-based computational prediction of protein–protein interactions with increased network coverage

(2014) Edson Luiz Folador et al.   Integrative Biology

Natural RNA circles function as efficient microRNA sponges

(2013) Thomas B. Hansen et al.   NATURE

Genome-wide inferring gene–phenotype relationship by walking on the heterogeneous network

(2010) Yongjin Li et al.   BIOINFORMATICS

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS