Article
Plant Sciences
Wenchong Chen, Weiwu Yu, Ang Dong, Yanru Zeng, Huwei Yuan, Bingsong Zheng, Rongling Wu
Summary: This study utilizes advanced genotyping technologies to investigate the genetic structure of Torreya grandis, a species with high economic and ornamental values. A high-density linkage map is constructed, and the results suggest that the identified QTLs are relatively young and can be better utilized through clonal propagation.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Fisheries
Xinghua Lin, Jiru Tan, Yijun Shen, Binlan Yang, Yulei Zhang, Yu Liao, Beibei Wang, Dayan Zhou, Guangli Li, Changxu Tian
Summary: In this study, a high-density genetic linkage map of Hong Kong catfish (Clarias fuscus) was generated using high-throughput sequencing. Sex-linked SNP loci and a sex-determining interval were identified, providing important tools and methodological guidance for sex control technology in breeding C. fuscus.
Article
Plant Sciences
Longyu Huang, Ming Li, Dingding Cao, Pingfang Yang
Summary: Lotus is a perennial aquatic plant with great value, the enlargement of lotus rhizome determines its yield, a genetic map and QTL mapping analysis were used to identify genes and markers associated with rhizome traits.
PLANT PHYSIOLOGY AND BIOCHEMISTRY
(2021)
Article
Plant Sciences
Harjot Singh Sohi, Manav Indra Singh Gill, Parveen Chhuneja, Naresh Kumar Arora, Sukhjinder Singh Maan, Jagmohan Singh
Summary: In this study, high leaf-anthocyanin reflective-index (ARI1) content cultivars of guava were developed through hybridization and a genetic linkage map was established. A marker closely associated with leaf anthocyanin content was identified.
Article
Fisheries
Xuekai Han, Yizhuo Ren, Xuemei Ouyang, Bo Zhang, Liying Sui
Summary: Artemia is an important live feed in larviculture and ideal experimental organism for scientific research. The study developed SNP markers and constructed a high-density genetic linkage map for Artemia franciscana, revealing genetic information and sex determination system of the species.
Article
Fisheries
Yu-Lin Zhou, Zhong-Wei Wang, Xin-Fen Guo, Jun-Jie Wu, Wei-Jia Lu, Li Zhou, Jian-Fang Gui
Summary: A high-density genetic linkage map of red-tail catfish was constructed using 2b-RAD sequencing technology, identifying QTLs and growth-related genes. Additionally, a sex-related QTL on LG20 and potential sex dimorphic genes were detected, providing important insights for future genetic studies and sex control breeding.
Article
Genetics & Heredity
Xin-Fen Guo, Yu-Lin Zhou, Min Liu, Zhi Li, Li Zhou, Zhong-Wei Wang, Jian-Fang Gui
Summary: In this study, a high-density genetic linkage map of red swamp crayfish was constructed using 2b-RAD sequencing technology, revealing multiple QTLs related to growth and sex traits and identifying potential candidate genes. Specifically, 28 QTLs for growth-related traits and a major locus for sex determination were discovered, providing valuable resources for genetic improvement and further research on red swamp crayfish.
FRONTIERS IN GENETICS
(2022)
Article
Plant Sciences
Xuejun Zhang, Yueming Ling, Wenli Yang, Minghua Wei, Zhenzhu Wang, Meihua Li, Yong Yang, Bin Liu, Hongping Yi, Yang-Dong Guo, Qiusheng Kong
Summary: This study constructed two F-2 populations using the DM-resistant accession PI 442177 and mapped QTLs conferring DM resistance. A high-density genetic map was generated and a major QTL DM9.1 was consistently detected at different growth stages. QTL-seq analysis validated the presence of DM9.1 and a KASP marker co-segregating with DM9.1 was successfully developed, providing valuable information for DM-resistant gene cloning and melon DM-resistant breeding programs.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Plant Sciences
Yifei Jiang, Huaiyong Luo, Bolun Yu, Yingbin Ding, Yanping Kang, Li Huang, Xiaojing Zhou, Nian Liu, Weigang Chen, Jianbin Guo, Dongxin Huai, Yong Lei, Huifang Jiang, Liying Yan, Boshou Liao
Summary: This study focused on mapping the quantitative trait locus (QTL) of resistance to A. flavus infection in the peanut variety J11. Six novel resistant QTLs were identified on chromosomes A05, A08, B01, B03, and B10, with phenotypic variances explained ranging from 5.03% to 10.87%. The combination of these QTLs significantly improved resistance to A. flavus infection, providing insights into the genetic basis of resistance and potential for further improvement in peanuts.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Fisheries
Jiamin Guo, Anqi Wang, Siqi Mao, Xiaoyan Xu, Jiale Li, Yubang Shen
Summary: This study constructed the first high-density genetic linkage map of black carp and identified QTL related to growth traits. The map provides valuable genomic resources for understanding economically important traits in black carp and can be used for comparative genomics and evolutionary studies.
Article
Biotechnology & Applied Microbiology
Ran Wang, Siyuan Xing, Peter M. M. Bourke, Xiuquan Qi, Miaomiao Lin, Danny Esselink, Paul Arens, Roeland E. E. Voorrips, Richard G. F. Visser, Leiming Sun, Yunpeng Zhong, Hong Gu, Yukuo Li, Sikai Li, Chris Maliepaard, Jinbao Fang
Summary: Kiwifruit is a woody, perennial and deciduous vine with multiple ploidy levels. Despite the availability of genomic resources, SNP genotyping is still challenging due to different levels of polyploidy. In this study, a high-density SNP genotyping array was developed and evaluated for genetic studies and breeding applications in kiwifruit.
PLANT BIOTECHNOLOGY JOURNAL
(2023)
Article
Fisheries
Jiamin Guo, Meng Zhang, Shentong Wang, Xiaoyan Xu, Yubang Shen, Jiale Li
Summary: In this study, a high-density linkage map was constructed for grass carp, which was used for mapping QTL of growth-related traits. Comparative genomic analysis revealed high synteny between grass carp and zebrafish.
Article
Plant Sciences
Dawei Wang, Lin Yang, Chen Shi, Siguang Li, Hongyan Tang, Chengzhong He, Nianhui Cai, Anan Duan, Hede Gong
Summary: In our study, a high-resolution genetic map of Simao pine using SLAF-seq technology was constructed for the first time. A total of 17 QTLs for four growth-related traits were identified based on this map. This provides valuable information for genomic studies and marker-assisted selection in Simao pine.
Article
Biochemistry & Molecular Biology
Sikandar Amanullah, Benjamin Agyei Osae, Tiantian Yang, Farhat Abbas, Shi Liu, Hongyu Liu, Xuezheng Wang, Peng Gao, Feishi Luan
Summary: In this study, a QTL mapping strategy was used to analyze the genomic regions related to fruit morphology traits using SNP and CAPS molecular markers. Multiple genetic loci and major/minor QTLs were identified. Fruit phenotypic correlation and principal component analysis revealed significant relationships and potential variability. These results provide valuable insights for fine QTL mapping and candidate gene mining, facilitating the development of new varieties.
MOLECULAR BIOLOGY REPORTS
(2022)
Article
Agronomy
Xin Hu, Yingquan Zhang, Jingjuan Zhang, Shahidul Islam, Maoyun She, Yun Zhao, Guixiang Tang, Yanjie Jiang, Junkang Rong, Wujun Ma
Summary: A wheat consensus genetic map named Sp7A_G7A was constructed using 5643 SNP markers, showing high collinearity with consensus map Con_map_Wang2014 and wheat physical map. This validated map will benefit QTL mapping, positional cloning, meta-QTL analysis, and wheat breeding.
Article
Fisheries
Hunter S. Bailey, Ashley N. Fincannon, Lee A. Fuiman
Summary: This study investigated the transfer of fatty acids from broodstock diets to eggs and the time needed for the eggs to equilibrate to the diet in Southern flounder. The findings indicate that different diet treatments significantly affect the fatty acid composition of eggs, and it takes 8-16 weeks for the eggs to adapt to changes in the adult diet. These results are important for improving broodstock diets and feeding protocols in stock-enhancement programs.
Article
Fisheries
Yu Liu, Mingtao Lei, Hector Victor, Yan Wang
Summary: This study confirms the feasibility of replacing raw fish diet with a formulated diet in commercial farming of large yellow croaker, which can increase fish survival and yield, and reduce feed cost and body lipid deposition.
Article
Fisheries
Xiaoyan Zhang, Lize San, Yucong Yang, Yuehong Tao, Jiangong Ren, Yufeng Liu, Zhongwei He, Jiashuo Di, Ziteng Pei, Guixing Wang, Jilun Hou
Summary: Gynogenesis is an effective technique for establishing homogeneous lines and confirming potential chromosomal mechanisms of sex determination in fish. This study successfully induced gynogenetic families in Thamnaconus modestus and established a complete method for gynogenesis induction.
Article
Fisheries
Julieta C. Martinelli, Megan Considine, Helen R. Casendino, Carolyn M. Tarpey, Isadora Jimenez-Hidalgo, Jacqueline L. Padilla-Gamino, Teri L. King, Lorenz Hauser, Steven Rumrill, Chelsea L. Wood
Summary: Shell-boring polychaetes have caused significant damage to mariculture operations worldwide, particularly in the US Pacific region. This study provides a comprehensive dataset on the prevalence, species distribution, and environmental associations of these parasites, highlighting the impact of season, culturing methods, and environmental factors on infestation.
Article
Fisheries
Juan Gao, Xueshan Li, Kangle Lu, Kai Song, Jian Zhang, Ling Wang, Chunxiao Zhang
Summary: This study investigated the effects of dietary protein levels on growth performance, antioxidant capacity, digestive enzyme activity, and metamorphosis rate of bullfrog tadpoles. The optimal dietary protein level for bullfrog tadpoles was estimated to be 42.49%-46.50% of the diet.
Article
Fisheries
Qiang Li, Lijun Duan, Dongsheng Jin, Yuxin Chen, Yirong Lou, Qianjin Zhou, Zhongjie Xu, Fangjie Chen, Hongxian Chen, Guizong Xu, Maocang Yan, Guanjun Yang, Jianfei Lu, Yanjun Zhang, Jiong Chen
Summary: This study developed a centrifugal microfluidic chip with on-chip RPA to detect five pathogenic microorganisms. The chip enabled the parallel analysis of six genetic markers from a single sample and allowed for the highly automated detection of multiple samples. Compared with PCR and DNA sequencing, the on-chip RPA assay showed high sensitivity and specificity for detecting multiple pathogens in shrimp aquaculture.
Article
Fisheries
Xingchen Huo, Pengxu Wang, Fengxia Zhao, Qian Liu, Qingqing Tian, Lingjie Tang, Maolin Lv, Zhaohui Wei, Chunrong Yang, Jianguo Su
Summary: Bacterial diseases in aquaculture ponds have negative effects on sustainable development. The use of composite I20 biotherapy has been shown to effectively treat bacterial diseases in bullfrog ponds, providing a new strategy for controlling bacterial diseases in aquaculture.
Article
Fisheries
Peng Yin, Takaya Saito, Per Gunnar Fjelldal, Bjorn Tharandur Bjornsson, Sofie Charlotte Remo, Sandeep Sharma, Rolf Erik Olsen, Kristin Hamre
Summary: This study aims to investigate the effect of seasonal changes in temperature and photoperiod on the redox metabolism of Atlantic salmon at the molecular level. The research findings suggest that the changing photoperiod and temperature influenced the redox metabolism of Atlantic salmon, highlighting the importance of oxidative status in the ecological implications.
Article
Fisheries
Nicholas Oppong Mensah, Jeffery Kofi Asare, Emmanuel Tetteh-Doku Mensah, Ernest Christlieb Amrago, Frank Osei Tutu, Anthony Donkor
Summary: This study investigates aquaculture farmers' preference for climate-smart aquaculture insurance products, the challenges they face, and their preferred insurance coverage. The results show that farmers prefer Climate-Induced Aquaculture Stock Mortality Insurance and the most significant constraint is the delay in claim settlement.
Article
Fisheries
Qiu-Ping Chai, Pei Wu, Wei-Dan Jiang, Yang Liu, Hong-Mei Ren, Xiao-Wan Jin, Lin Feng, Xiao-Qiu Zhou
Summary: The study found that appropriate levels of potassium diformate (KDF) can enhance the immune defense and mediate the inflammatory process in fish, possibly through the regulation of T cell differentiation via JAK-STAT and NF-kappa B signaling pathways.
Article
Fisheries
Tian Zhu, Haomin Jia, Haopeng Zhang, Yujing Xiao, Cui Han, Jiaxin Yang
Summary: Chicken manure has significant effects on the cultivation of Chlorella and rotifers. The optimal amount of chicken manure extract for continuous cultivation is 10 mLL-1. Chicken manure can promote the growth of Chlorella and improve the fatty acid composition, indirectly enhancing the growth condition and fatty acid content of rotifers.
Article
Fisheries
Zheng Luo, Yang Yu, Zhenning Bao, Fuhua Li
Summary: This study analyzed the heritability and genetic correlation of two growth traits in Pacific white shrimp and evaluated the genomic prediction using different genomic selection models. The results showed that the NeuralNet model had the highest prediction accuracy and better prospects for predicting shrimp growth traits.
Article
Fisheries
Alberto Ruiz, Ignasi Sanahuja, Karl B. Andree, Dolors Furones, Paul G. Holhorea, Josep A. Calduch-Giner, Jose J. Pastor, Marc Vinas, Jaume Perez-Sanchez, Sofia Morais, Enric Gisbert
Summary: Supplementing diets with a combination of spice oleoresins can reduce lipid accumulation and inflammation in farmed fish. The combination of spice oleoresins also has an immunomodulatory effect on the fish's intestinal immune system, potentially offering anti-inflammatory benefits.
Article
Fisheries
Beibei Zhao, Renhui Mei, Le Li, Di Hu, Lei Li
Summary: This study reveals that JfCXCL8_L1a and JfCXCL8_L1b have different immune pathways, and JfCXCL8_L1b plays a significant role in enhancing the adaptive immunity of T cell-dependent antigen.
Article
Fisheries
Yuhang Liu, Danying Cao, Nan Wu, Xuyang Zhao, Qingsong Zhu, Lian Su, Fatima Altaf, Qianqian Zhang, Haokun Liu, Yongming Li, Bruno Hamish Unger, Yingyin Cheng, Wanting Zhang, Aihua Li, Yaping Wang, Xiao-Qin Xia
Summary: Based on previous research, sinomenine has been found to protect mucosal immunity in farmed fish species by preventing intestinal pathological changes and regulating gene expression related to inflammation. It also enhances immune homeostasis and controls the growth of pathogenic bacteria.