Impact of rice straw management strategies on rice rhizosphere microbiomes

Analysis of microbial utilization of rice straw in paddy soil using a DNA‐SIP approach

(2020) Tengfei Guo et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Functional diversity of rhizosphere soil microbial communities in response to different tillage and crop residue retention in a double-cropping rice field

(2020) Haiming Tang et al.   PLoS One

Effects of Full Straw Incorporation on Soil Fertility and Crop Yield in Rice-Wheat Rotation for Silty Clay Loamy Cropland

(2019) Xinlin Zhao et al.   Agronomy-Basel

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Fungal communities and functions response to long-term fertilization in paddy soils

(2018) San'an Nie et al.   APPLIED SOIL ECOLOGY

Fertilization shapes a well-organized community of bacterial decomposers for accelerated paddy straw degradation

(2018) Yushan Zhan et al.   Scientific Reports

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice

(2018) Joseph A. Edwards et al.   PLOS BIOLOGY

Temporal dynamics and compartment specific rice straw degradation in bulk soil and the rhizosphere of maize

(2018) Sarah A. Maarastawi et al.   SOIL BIOLOGY & BIOCHEMISTRY

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Consistent increase in abundance and diversity but variable change in community composition of bacteria in topsoil of rice paddy under short term biochar treatment across three sites from South China

(2015) Junhui Chen et al.   APPLIED SOIL ECOLOGY

Short-term responses of soil organic carbon and carbon pool management index to different annual straw return rates in a rice–wheat cropping system

(2015) Liqun Zhu et al.   CATENA

Straw incorporated after mechanized harvesting of irrigated rice affects net emissions of CH4 and CO2 based on eddy covariance measurements

(2015) Ma. Carmelita R. Alberto et al.   FIELD CROPS RESEARCH

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Greenhouse gas emissions from rice straw burning and straw-mushroom cultivation in a triple rice cropping system in the Mekong Delta

(2015) Hironori Arai et al.   SOIL SCIENCE AND PLANT NUTRITION

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Endophytic Actinobacteria and the Interaction of Micromonospora and Nitrogen Fixing Plants

(2015) Martha E. Trujillo et al.   Frontiers in Microbiology

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Bio-Fertilizer, Ground Magnesium Limestone and Basalt Applications May Improve Chemical Properties of Malaysian Acid Sulfate Soils and Rice Growth

(2014) Q.A. PANHWAR et al.   PEDOSPHERE

Rice straw incorporated just before soil flooding increases acetic acid formation and decreases available nitrogen

(2014) Ronaldir Knoblauch et al.   REVISTA BRASILEIRA DE CIENCIA DO SOLO

Novel multispecies microbial consortia involved in lignocellulose and 5-hydroxymethylfurfural bioconversion

(2013) Diego Javier Jiménez et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Responses of rice production, milled rice quality and soil properties to various nitrogen inputs and rice straw incorporation under continuous plastic film mulching cultivation

(2013) Ling Yuan et al.   FIELD CROPS RESEARCH

Effects of straw incorporation on Rhizoctonia solani inoculum in paddy soil and rice sheath blight severity

(2013) H. ZHU et al.   JOURNAL OF AGRICULTURAL SCIENCE

Low pH, Aluminum, and Phosphorus Coordinately Regulate Malate Exudation through GmALMT1 to Improve Soybean Adaptation to Acid Soils

(2013) C. Liang et al.   PLANT PHYSIOLOGY

Microbial response to rhizodeposition depending on water regimes in paddy soils

(2013) Jing Tian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

(2012) Daniel van der Lelie et al.   PLoS One

Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis

(2011) A. Sessitsch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST