Ultrastructure of Organohalide-Respiring Dehalococcoidia Revealed by Cryo-Electron Tomography

Respiratory Vinyl Chloride Reductive Dechlorination to Ethene in TceA-Expressing Dehalococcoides mccartyi

(2021) Jun Yan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Mineralization versus fermentation: evidence for two distinct anaerobic bacterial degradation pathways for dichloromethane

(2020) Gao Chen et al.   ISME Journal

Metagenome-Guided Proteomic Quantification of Reductive Dehalogenases in the Dehalococcoides mccartyi - Containing Consortium SDC-9

(2020) Katarzyna H. Kucharzyk et al.   JOURNAL OF PROTEOME RESEARCH

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Lipid Anchoring of Archaeosortase Substrates and Midcell Growth in Haloarchaea

(2020) Mohd Farid Abdul-Halim et al.   mBio

Roles of Organohalide-Respiring Dehalococcoidia in Carbon Cycling

(2020) Yi Yang et al.   mSystems

Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Dehalogenimonas alkenigignens Strain BRE15M

(2020) Alba Trueba-Santiso et al.   JOURNAL OF PROTEOME RESEARCH

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference

(2020) Jacob L. Steenwyk et al.   PLOS BIOLOGY

A Pilot-Scale Field Study: In Situ Treatment of PCB-Impacted Sediments with Bioamended Activated Carbon

(2019) Rayford B. Payne et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

(2019) Pierre-Alain Chaumeil et al.   BIOINFORMATICS

Electron cryotomography of Mycoplasma pneumoniae mutants correlates terminal organelle architectural features and function

(2018) Duncan C. Krause et al.   MOLECULAR MICROBIOLOGY

The Complexome of Dehalococcoides mccartyi Reveals Its Organohalide Respiration-Complex Is Modular

(2018) Katja Seidel et al.   Frontiers in Microbiology

Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes

(2018) Katherine Clark et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Mutualistic interaction between dichloromethane- and chloromethane-degrading bacteria in an anaerobic mixed culture

(2017) Gao Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Dehalogenimonas formicexedens sp. nov., a chlorinated alkane-respiring bacterium isolated from contaminated groundwater

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes

(2017) Yi Yang et al.   ISME Journal

Purinyl-cobamide is a native prosthetic group of reductive dehalogenases

(2017) Jun Yan et al.   Nature Chemical Biology

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

A H2 -oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1

(2017) Stefanie Hartwig et al.   Environmental Microbiology Reports

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Identification of a multi-protein reductive dehalogenase complex in D ehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement

(2016) Anja Kublik et al.   ENVIRONMENTAL MICROBIOLOGY

Dehalococcoides mccartyi Strain DCMB5 Respires a Broad Spectrum of Chlorinated Aromatic Compounds

(2014) Marlén Pöritz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls

(2014) S. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

(2013) L. A. Hug et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Functional Characterization of Reductive Dehalogenases by Using Blue Native Polyacrylamide Gel Electrophoresis

(2012) Shuiquan Tang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi

(2012) F. E. Loffler et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Electron Cryotomography

(2010) E. I. Tocheva et al.   Cold Spring Harbor Perspectives in Biology

"Dehalococcoides" sp. Strain CBDB1 Extensively Dechlorinates the Commercial Polychlorinated Biphenyl Mixture Aroclor 1260

(2009) L. Adrian et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Absolute quantification ofDehalococcoidesproteins: enzyme bioindicators of chlorinated ethene dehalorespiration

(2009) Jeffrey J. Werner et al.   ENVIRONMENTAL MICROBIOLOGY

Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater

(2009) W. M. Moe et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

(2009) Paul J. McMurdie et al.   PLoS Genetics

Dehalorespiration with Polychlorinated Biphenyls by an Anaerobic Ultramicrobacterium

(2008) H. D. May et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation of novel bacteria within theChloroflexicapable of reductive dechlorination of 1,2,3-trichloropropane

(2008) J. Yan et al.   ENVIRONMENTAL MICROBIOLOGY