Refining the Y chromosome phylogeny with southern African sequences

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

(2015) Monika Karmin et al.   GENOME RESEARCH

The Y-chromosome point mutation rate in humans

(2015) Agnar Helgason et al.   NATURE GENETICS

An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa

(2014) R. Scozzari et al.   GENOME RESEARCH

The Y-Chromosome Tree Bursts into Leaf: 13,000 High-Confidence SNPs Covering the Majority of Known Clades

(2014) P. Hallast et al.   MOLECULAR BIOLOGY AND EVOLUTION

Migration and Interaction in a Contact Zone: mtDNA Variation among Bantu-Speakers in Southern Africa

(2014) Chiara Barbieri et al.   PLoS One

Variation in Male Reproductive Longevity across Traditional Societies

(2014) Lucio Vinicius et al.   PLoS One

Natural Selection Reduced Diversity on Human Y Chromosomes

(2014) Melissa A. Wilson Sayres et al.   PLoS Genetics

An African American Paternal Lineage Adds an Extremely Ancient Root to the Human Y Chromosome Phylogenetic Tree

(2013) Fernando L. Mendez et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Ancient Substructure in Early mtDNA Lineages of Southern Africa

(2013) Chiara Barbieri et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Unraveling the complex maternal history of Southern African Khoisan populations

(2013) Chiara Barbieri et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Population Growth Inflates the Per-Individual Number of Deleterious Mutations and Reduces Their Mean Effect

(2013) Elodie Gazave et al.   GENETICS

Paternal Age and Genetic Load

(2013) Gregory Cochran et al.   HUMAN BIOLOGY

Seeing the Wood for the Trees: A Minimal Reference Phylogeny for the Human Y Chromosome

(2013) Mannis van Oven et al.   HUMAN MUTATION

Low-Pass DNA Sequencing of 1200 Sardinians Reconstructs European Y-Chromosome Phylogeny

(2013) P. Francalacci et al.   SCIENCE

Sequencing Y Chromosomes Resolves Discrepancy in Time to Common Ancestor of Males Versus Females

(2013) G. D. Poznik et al.   SCIENCE

A calibrated human Y-chromosomal phylogeny based on resequencing

(2012) W. Wei et al.   GENOME RESEARCH

Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rate of de novo mutations and the importance of father’s age to disease risk

(2012) Augustine Kong et al.   NATURE

A direct characterization of human mutation based on microsatellites

(2012) James X Sun et al.   NATURE GENETICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The genetic prehistory of southern Africa

(2012) Joseph K. Pickrell et al.   Nature Communications

A Revised Root for the Human Y Chromosomal Phylogenetic Tree: The Origin of Patrilineal Diversity in Africa

(2011) Fulvio Cruciani et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Signatures of the Preagricultural Peopling Processes in Sub-Saharan Africa as Revealed by the Phylogeography of Early Y Chromosome Lineages

(2011) C. Batini et al.   MOLECULAR BIOLOGY AND EVOLUTION

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Y-Chromosomal Variation in Sub-Saharan Africa: Insights Into the History of Niger-Congo Groups

(2010) C. de Filippo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Human Y Chromosome Base-Substitution Mutation Rate Measured by Direct Sequencing in a Deep-Rooting Pedigree

(2009) Yali Xue et al.   CURRENT BIOLOGY

A Worldwide Survey of Human Male Demographic History Based on Y-SNP and Y-STR Data from the HGDP-CEPH Populations

(2009) W. Shi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic and Demographic Implications of the Bantu Expansion: Insights from Human Paternal Lineages

(2009) G. Berniell-Lee et al.   MOLECULAR BIOLOGY AND EVOLUTION

New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree

(2008) T. M. Karafet et al.   GENOME RESEARCH