Mitochondrial DNA sequencing of a wet-collection syntype demonstrates the importance of type material as genetic resource for lantern shark taxonomy (Chondrichthyes: Etmopteridae)

Successful application of ancient DNA extraction and library construction protocols to museum wet collection specimens

(2021) Nicolas Straube et al.   Molecular Ecology Resources

Etmopterus brosei sp. nov.: a new lanternshark (Squaliformes: Etmopteridae) from the southeastern Atlantic and southwestern Indian oceans, with a revised key to the Etmopterus lucifer clade

(2021) David A. Ebert et al.   Marine Biodiversity

Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)

(2020) Loïs Rancilhac et al.   JOURNAL OF NATURAL HISTORY

De novo transcriptome analyses provide insights into opsin-based photoreception in the lanternshark Etmopterus spinax

(2019) Jérôme Delroisse et al.   PLoS One

Genome skimming herbarium specimens for DNA barcoding and phylogenomics

(2018) Chun-Xia Zeng et al.   Plant Methods

Etmopterus marshae sp. nov, a new lanternshark (Squaliformes: Etmopteridae) from the Philippine Islands, with a revised key to the Etmopterus lucifer clade

(2018) DAVID A. EBERT et al.   ZOOTAXA

Etmopterus samadiae n. sp., a new lanternshark (Squaliformes: Etmopteridae) from Papua New Guinea

(2017) WILLIAM T. WHITE et al.   ZOOTAXA

Etmopterus lailae sp. nov., a new lanternshark (Squaliformes: Etmopteridae) from the Northwestern Hawaiian Islands

(2017) DAVID A. EBERT et al.   ZOOTAXA

Origins of the Greenland shark (Somniosus microcephalus ): Impacts of ice-olation and introgression

(2017) Ryan P. Walter et al.   Ecology and Evolution

The phylogenomic position of the smooth lanternshark Etmopterus pusillus (Squaliformes: Etmopteridae) inferred from the mitochondrial genome

(2016) Hao Chen et al.   Mitochondrial DNA Part B-Resources

On the occurrence of the Southern Lanternshark, Etmopterus granulosus , off South Africa, with comments on the validity of E. compagnoi

(2015) Nicolas Straube et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A DNA sequence-based identification checklist for Taiwanese chondrichthyans

(2013) NICOLAS STRAUBE et al.   ZOOTAXA

A DNA Sequence–Based Approach To the Identification of Shark and Ray Species and Its Implications for Global Elasmobranch Diversity and Parasitology

(2012) G. J. P. Naylor et al.   BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY

Genetic population structure and connectivity in a commercially exploited and wide-ranging deepwater shark, the leafscale gulper (Centrophorus squamosus)

(2012) A. Veríssimo et al.   MARINE AND FRESHWATER RESEARCH

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Population structure of a deep-water squaloid shark, the Portuguese dogfish (Centroscymnus coelolepis)

(2011) A. Verissimo et al.   ICES JOURNAL OF MARINE SCIENCE

SAMStat: monitoring biases in next generation sequencing data

(2010) T. Lassmann et al.   BIOINFORMATICS

Molecular phylogeny and node time estimation of bioluminescent Lantern Sharks (Elasmobranchii: Etmopteridae)

(2010) Nicolas Straube et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cryptic diversity and species assignment of large lantern sharks of the Etmopterus spinax clade from the Southern Hemisphere (Squaliformes, Etmopteridae)

(2010) Nicolas Straube et al.   ZOOLOGICA SCRIPTA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A rapid column-based ancient DNA extraction method for increased sample throughput

(2009) NADIN ROHLAND et al.   Molecular Ecology Resources