The chromosome-level Stevia genome provides insights into steviol glycoside biosynthesis

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Hydrophobic recognition allows the glycosyltransferase UGT76G1 to catalyze its substrate in two orientations

(2019) Ting Yang et al.   Nature Communications

Diterpenoid UDP-Glycosyltransferases from Chinese Sweet Tea and Ashitaba Complete the Biosynthesis of Rubusoside

(2018) Yuwei Sun et al.   Molecular Plant

Glucose-regulated phosphorylation of TET2 by AMPK reveals a pathway linking diabetes to cancer

(2018) Di Wu et al.   NATURE

The Chrysanthemum nankingense Genome Provides Insights into the Evolution and Diversification of Chrysanthemum Flowers and Medicinal Traits

(2018) Chi Song et al.   Molecular Plant

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Steviol glycosides enhance pancreatic beta-cell function and taste sensation by potentiation of TRPM5 channel activity

(2017) Koenraad Philippaert et al.   Nature Communications

Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce

(2017) Sebastian Reyes-Chin-Wo et al.   Nature Communications

Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae

(2016) Michael S. Barker et al.   AMERICAN JOURNAL OF BOTANY

Ancient WGD events as drivers of key innovations in angiosperms

(2016) Pamela S Soltis et al.   CURRENT OPINION IN PLANT BIOLOGY

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Using intron position conservation for homology-based gene prediction

(2016) Jens Keilwagen et al.   NUCLEIC ACIDS RESEARCH

Heatmapper: web-enabled heat mapping for all

(2016) Sasha Babicki et al.   NUCLEIC ACIDS RESEARCH

Evolution of gene duplication in plants

(2016) Nicholas Panchy et al.   PLANT PHYSIOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Pathway mining-based integration of critical enzyme parts for de novo biosynthesis of steviolglycosides sweetener in Escherichia coli

(2015) Jianfeng Wang et al.   CELL RESEARCH

Polyploidy and genome evolution in plants

(2015) Pamela S Soltis et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Identification of protein coding regions in RNA transcripts

(2015) Shiyuyun Tang et al.   NUCLEIC ACIDS RESEARCH

Doubling down on genomes: Polyploidy and crop plants

(2014) Simon Renny-Byfield et al.   AMERICAN JOURNAL OF BOTANY

To Gibberellins and Beyond! Surveying the Evolution of (Di)Terpenoid Metabolism

(2014) Jiachen Zi et al.   Annual Review of Plant Biology

Methylerythritol and Mevalonate Pathway Contributions to Biosynthesis of Mono-, Sesqui-, and Diterpenes in Glandular Trichomes and Leaves of Stevia rebaudiana Bertoni

(2014) Ursula Wölwer-Rieck et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Diterpene glycosides from Stevia phlebophylla A. Gray

(2013) Stijn Ceunen et al.   CARBOHYDRATE RESEARCH

Steviol Glycosides: Chemical Diversity, Metabolism, and Function

(2013) Stijn Ceunen et al.   JOURNAL OF NATURAL PRODUCTS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

Functional Analysis of Arabidopsis CYP714A1 and CYP714A2 Reveals That They are Distinct Gibberellin Modification Enzymes

(2013) Takahito Nomura et al.   PLANT AND CELL PHYSIOLOGY

Artificial sweeteners produce the counterintuitive effect of inducing metabolic derangements

(2013) Susan E. Swithers   TRENDS IN ENDOCRINOLOGY AND METABOLISM

UGT75L6 and UGT94E5 mediate sequential glucosylation of crocetin to crocin inGardenia jasminoides

(2012) Mai Nagatoshi et al.   FEBS LETTERS

Hi–C: A comprehensive technique to capture the conformation of genomes

(2012) Jon-Matthew Belton et al.   METHODS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

A genome triplication associated with early diversification of the core eudicots

(2012) Yuannian Jiao et al.   GENOME BIOLOGY

A review on the improvement of stevia [Stevia rebaudiana (Bertoni)]

(2011) Ashok Kumar Yadav et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Stevia rebaudiana Bertoni, source of a high-potency natural sweetener: A comprehensive review on the biochemical, nutritional and functional aspects

(2011) Roberto Lemus-Mondaca et al.   FOOD CHEMISTRY

A comprehensive analysis of fifteen genes of steviol glycosides biosynthesis pathway in Stevia rebaudiana (Bertoni)

(2011) Hitesh Kumar et al.   GENE

Polyploidy and angiosperm diversification

(2009) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Gibberellin Metabolism and its Regulation

(2008) Shinjiro Yamaguchi   Annual Review of Plant Biology

Stevioside and related compounds: Therapeutic benefits beyond sweetness

(2008) Varanuj Chatsudthipong et al.   PHARMACOLOGY & THERAPEUTICS

Peroxisomal Localization of Arabidopsis Isopentenyl Diphosphate Isomerases Suggests That Part of the Plant Isoprenoid Mevalonic Acid Pathway Is Compartmentalized to Peroxisomes

(2008) M. Sapir-Mir et al.   PLANT PHYSIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY