Ultra-accurate microbial amplicon sequencing with synthetic long reads

Systematic Profiling of Full-Length Ig and TCR Repertoire Diversity in Rhesus Macaque through Long Read Transcriptome Sequencing

(2020) Hayden N. Brochu et al.   JOURNAL OF IMMUNOLOGY

Introductions and early spread of SARS-CoV-2 in the New York City area

(2020) Ana S. Gonzalez-Reiche et al.   SCIENCE

Superior resolution characterisation of microbial diversity in anaerobic digesters using full-length 16S rRNA gene amplicon sequencing

(2020) Theo Y.C. Lam et al.   WATER RESEARCH

Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data

(2019) H. Beiki et al.   BMC GENOMICS

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

(2019) Benjamin J Callahan et al.   NUCLEIC ACIDS RESEARCH

Long-read amplicon denoising

(2019) Venkatesh Kumar et al.   NUCLEIC ACIDS RESEARCH

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

(2019) Jethro S. Johnson et al.   Nature Communications

Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias

(2018) Søren M Karst et al.   NATURE BIOTECHNOLOGY

Structural absorption by barbule microstructures of super black bird of paradise feathers

(2018) Dakota E. McCoy et al.   Nature Communications

Vaccine-Induced Protection from Homologous Tier 2 SHIV Challenge in Nonhuman Primates Depends on Serum-Neutralizing Antibody Titers

(2018) Matthias G. Pauthner et al.   IMMUNITY

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

(2018) Joshua P. Earl et al.   Microbiome

Major histocompatibility complex haplotyping and long-amplicon allele discovery in cynomolgus macaques from Chinese breeding facilities

(2017) Julie A. Karl et al.   IMMUNOGENETICS

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Antibody 10-1074 suppresses viremia in HIV-1-infected individuals

(2017) Marina Caskey et al.   NATURE MEDICINE

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

(2016) Grace X Y Zheng et al.   NATURE BIOTECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

(2016) James A. Stapleton et al.   PLoS One

A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq

(2016) Catherine M. Burke et al.   PeerJ

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly

(2015) Sergey Koren et al.   CURRENT OPINION IN MICROBIOLOGY

No assembly required: Full-length MHC class I allele discovery by PacBio circular consensus sequencing

(2015) Catherine J. Westbrook et al.   HUMAN IMMUNOLOGY

Lack of Evidence for Plague or Anthrax on the New York City Subway

(2015) Joel Ackelsberg et al.   Cell Systems

Modern Methods for Delineating Metagenomic Complexity

(2015) Ebrahim Afshinnekoo et al.   Cell Systems

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics

(2015) Ebrahim Afshinnekoo et al.   Cell Systems

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Whole-genome haplotyping using long reads and statistical methods

(2014) Volodymyr Kuleshov et al.   NATURE BIOTECHNOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY