Scientific and budgetary trade‐offs between morphological and molecular methods for deep‐sea biodiversity assessment

Eukaryotic Biodiversity and Spatial Patterns in the Clarion-Clipperton Zone and Other Abyssal Regions: Insights From Sediment DNA and RNA Metabarcoding

(2021) Franck Lejzerowicz et al.   Frontiers in Marine Science

High-throughput DNA barcoding of oligochaetes for abundance-based indices to assess the biological quality of sediments in streams and lakes

(2020) Régis Vivien et al.   Scientific Reports

Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone

(2020) Olivier Laroche et al.   MOLECULAR ECOLOGY

Effects of a deep-sea mining experiment on seafloor microbial communities and functions after 26 years

(2020) T. R. Vonnahme et al.   Science Advances

From Sea Surface to Seafloor: A Benthic Allochthonous eDNA Survey for the Abyssal Ocean

(2020) Olivier Laroche et al.   Frontiers in Marine Science

A local scale analysis of manganese nodules influence on the Clarion-Clipperton Fracture Zone macrobenthos

(2020) Pasotti Francesca et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

Diversity and spatial patterns of foraminiferal assemblages in the eastern Clarion–Clipperton zone (abyssal eastern equatorial Pacific)

(2019) Aurélie Goineau et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Developing Foram-AMBI for biomonitoring in the Mediterranean: Species assignments to ecological categories

(2018) Frans Jorissen et al.   MARINE MICROPALEONTOLOGY

Scaling up: A guide to high-throughput genomic approaches for biodiversity analysis

(2018) Teresita M. Porter et al.   MOLECULAR ECOLOGY

Megafaunal variation in the abyssal landscape of the Clarion Clipperton Zone

(2018) Erik Simon-Lledó et al.   PROGRESS IN OCEANOGRAPHY

Embracing Environmental Genomics and Machine Learning for Routine Biomonitoring

(2018) Tristan Cordier et al.   TRENDS IN MICROBIOLOGY

Mapping benthic biodiversity using georeferenced environmental data and predictive modeling

(2017) Anneliis Peterson et al.   Marine Biodiversity

Review of recent trends in ecological studies of deep-sea meiofauna, with focus on patterns and processes at small to regional spatial scales

(2017) Norliana Rosli et al.   Marine Biodiversity

Novel benthic foraminifera are abundant and diverse in an area of the abyssal equatorial Pacific licensed for polymetallic nodule exploration

(2017) Aurélie Goineau et al.   Scientific Reports

How do ecologists select and use indicator species to monitor ecological change? Insights from 14 years of publication in Ecological Indicators

(2016) Ahmed A.H. Siddig et al.   ECOLOGICAL INDICATORS

Quantifying relative fish abundance with eDNA: a promising tool for fisheries management

(2016) Anaïs Lacoursière-Roussel et al.   JOURNAL OF APPLIED ECOLOGY

Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities

(2016) Christine N. Shulse et al.   MicrobiologyOpen

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

(2015) Franck Lejzerowicz et al.   Scientific Reports

Patchiness of deep-sea benthic Foraminifera across the Southern Ocean: Insights from high-throughput DNA sequencing

(2014) Franck Lejzerowicz et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The FOBIMO (FOraminiferal BIo-MOnitoring) initiative—Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studies

(2012) Joachim Schönfeld et al.   MARINE MICROPALEONTOLOGY

Deep-sea nematode assemblage has not recovered 26 years after experimental mining of polymetallic nodules (Clarion-Clipperton Fracture Zone, Tropical Eastern Pacific)

(2011) Dmitry M. Miljutin et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Molecular analyses reveal high levels of eukaryotic richness associated with enigmatic deep-sea protists (Komokiacea)

(2009) B. Lecroq et al.   Marine Biodiversity

Deep-sea nematode assemblages of the Clarion-Clipperton Nodule Province (Tropical North-Eastern Pacific)

(2009) Maria A. Miljutina et al.   Marine Biodiversity