Organic farming practices change the soil bacteria community, improving soil quality and maize crop yields

Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils

(2020) Anastasia A. Ivanova et al.   PLoS One

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Long-term effects of agricultural production systems on structure and function of the soil microbial community

(2019) Xueli Chen et al.   APPLIED SOIL ECOLOGY

New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes

(2018) Marie E. Kroeger et al.   Frontiers in Microbiology

Organic fertilizer, but not heavy liming, enhances banana biomass, increases soil organic carbon and modifies soil microbiota

(2018) Jiangzhou Zhang et al.   APPLIED SOIL ECOLOGY

Long-term no-tillage and organic input management enhanced the diversity and stability of soil microbial community

(2017) Yi Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System

(2017) Manoeli Lupatini et al.   Frontiers in Microbiology

Effects of phosphorus addition with and without nitrogen addition on biological nitrogen fixation in tropical legume and non-legume tree plantations

(2016) Mianhai Zheng et al.   BIOGEOCHEMISTRY

Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter

(2016) Thea Whitman et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Molybdenum and phosphorus limitation of moss-associated nitrogen fixation in boreal ecosystems

(2016) Kathrin Rousk et al.   NEW PHYTOLOGIST

Associations between soil bacterial community structure and nutrient cycling functions in long-term organic farm soils following cover crop and organic fertilizer amendment

(2016) Adria L. Fernandez et al.   SCIENCE OF THE TOTAL ENVIRONMENT

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Six-year transition from conventional to organic farming: effects on crop production and soil quality

(2015) Dario Sacco et al.   EUROPEAN JOURNAL OF AGRONOMY

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Bacterial communities in the rhizosphere of Vitis vinifera L. cultivated under distinct agricultural practices in Argentina

(2014) A. D. Vega-Avila et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

pH-dominated niche segregation of ammonia-oxidising microorganisms in Chinese agricultural soils

(2014) Hu Baolan et al.   FEMS MICROBIOLOGY ECOLOGY

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Effects of Manure Compost Application on Soil Microbial Community Diversity and Soil Microenvironments in a Temperate Cropland in China

(2014) Zhen Zhen et al.   PLoS One

Leaf litter is the main driver for changes in bacterial community structures in the rhizosphere of ash and beech

(2013) Birgit Pfeiffer et al.   APPLIED SOIL ECOLOGY

Effect of organic, conventional and mixed cultivation practices on soil microbial community structure and nematode abundance in a cultivated onion crop

(2013) Kim Reilly et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Soil health: looking for suitable indicators. What should be considered to assess the effects of use and management on soil health?

(2013) Elke Jurandy Bran Nogueira Cardoso et al.   SCIENTIA AGRICOLA

Does organic farming reduce environmental impacts? – A meta-analysis of European research

(2012) H.L. Tuomisto et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Comparing the yields of organic and conventional agriculture

(2012) Verena Seufert et al.   NATURE

Addition of organic and inorganic P sources to soil – Effects on P pools and microorganisms

(2012) Muhammad Asghar Malik et al.   SOIL BIOLOGY & BIOCHEMISTRY

Permanganate Oxidizable Carbon Reflects a Processed Soil Fraction that is Sensitive to Management

(2012) Steven W. Culman et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Phosphorus in runoff from two highly weathered soils of the tropics

(2011) John Ramírez-Ávila et al.   CANADIAN JOURNAL OF SOIL SCIENCE

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Effect of agronomic management on risk of suspended solids and phosphorus losses from soil to waters

(2011) Teresa Borda et al.   JOURNAL OF SOILS AND SEDIMENTS

Chemical and microbiological hazards associated with recycling of anaerobic digested residue intended for agricultural use

(2011) Espen Govasmark et al.   WASTE MANAGEMENT

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

A meta‐analysis of the differences in environmental impacts between organic and conventional farming

(2009) Koen Mondelaers et al.   British Food Journal

Sediment Fingerprinting: Review of the Method and Future Improvements for Allocating Nonpoint Source Pollution

(2009) Charles M. Davis et al.   JOURNAL OF ENVIRONMENTAL ENGINEERING

STEEP: Impact of long-term conservation farming research and education in Pacific Northwest wheatlands

(2009) H. Kok et al.   JOURNAL OF SOIL AND WATER CONSERVATION

The role of soil organic matter in maintaining the productivity and yield stability of cereals in China

(2008) Genxing Pan et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

The role of conservation agriculture in sustainable agriculture

(2007) P. R Hobbs et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Poultry litter and tillage influences on corn production and soil nutrients in a Kentucky silt loam soil

(2007) K.R. Sistani et al.   SOIL & TILLAGE RESEARCH