Microsatellites as Agents of Adaptive Change: An RNA-Seq-Based Comparative Study of Transcriptomes from Five Helianthus Species

Multiple chromosomal inversions contribute to adaptive divergence of a dune sunflower ecotype

(2020) Kaichi Huang et al.   MOLECULAR ECOLOGY

Transcribed microsatellite allele lengths are often correlated with gene expression in natural sunflower populations

(2020) Chathurani Ranathunge et al.   MOLECULAR ECOLOGY

Massive haplotypes underlie ecotypic differentiation in sunflowers

(2020) Marco Todesco et al.   NATURE

The impact of short tandem repeat variation on gene expression

(2019) Stephanie Feupe Fotsing et al.   NATURE GENETICS

Transcriptome profiles of sunflower reveal the potential role of microsatellites in gene expression divergence

(2018) Chathurani Ranathunge et al.   MOLECULAR ECOLOGY

Functional Mechanisms of Microsatellite DNA in Eukaryotic Genomes

(2017) Andrew T.M. Bagshaw   Genome Biology and Evolution

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Variability in a Short Tandem Repeat Mediates Complex Epistatic Interactions in Arabidopsis thaliana

(2016) Maximilian Oliver Press et al.   GENETICS

Sex-specific mediation effect of the right fusiform face area volume on the association between variants in repeat length ofAVPR1ARS3 and altruistic behavior in healthy adults

(2016) Junping Wang et al.   HUMAN BRAIN MAPPING

Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans

(2016) Javier Quilez et al.   NUCLEIC ACIDS RESEARCH

Variability in a Short Tandem Repeat Mediates Complex Epistatic Interactions in Arabidopsis thaliana

(2016) Maximilian Oliver Press et al.   GENETICS

The Report of My Death was an Exaggeration: A Review for Researchers Using Microsatellites in the 21st Century

(2016) Richard G. J. Hodel et al.   Applications in Plant Sciences

A polymorphic (GA/CT)n- SSR influences promoter activity of Tryptophan decarboxylase gene in Catharanthus roseus L. Don

(2016) Santosh Kumar et al.   Scientific Reports

Species tree estimation of diploid Helianthus (Asteraceae) using target enrichment

(2015) J. D. Stephens et al.   AMERICAN JOURNAL OF BOTANY

Exceptionally long 5′ UTR short tandem repeats specifically linked to primates

(2015) P. Namdar-Aligoodarzi et al.   GENE

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

(2015) Tugce Bilgin Sonay et al.   GENOME RESEARCH

Repeat length variation in the 5ʹUTR ofmyo-inositol monophosphatase gene is related to phytic acid content and contributes to drought tolerance in chickpea (Cicer arietinumL.)

(2015) Archana Joshi-Saha et al.   JOURNAL OF EXPERIMENTAL BOTANY

Abundant contribution of short tandem repeats to gene expression variation in humans

(2015) Melissa Gymrek et al.   NATURE GENETICS

Core promoter short tandem repeats as evolutionary switch codes for primate speciation

(2014) Mina Ohadi et al.   AMERICAN JOURNAL OF PRIMATOLOGY

The Conserved PFT1 Tandem Repeat Is Crucial for Proper Flowering in Arabidopsis thaliana

(2014) P. Rival et al.   GENETICS

DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES

(2013) Rose L. Andrew et al.   EVOLUTION

Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers

(2013) Sebastien Renaut et al.   MOLECULAR ECOLOGY

Alternative 5’ Untranslated Regions Are Involved in Expression Regulation of Human Heme Oxygenase-1

(2013) Marcel Kramer et al.   PLoS One

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

Transcription factor ATF-3 regulates allele variation phenotypes of the human SLC11A1 gene

(2012) Styliani Taka et al.   MOLECULAR BIOLOGY REPORTS

Accurate human microsatellite genotypes from high-throughput resequencing data using informed error profiles

(2012) Gareth Highnam et al.   NUCLEIC ACIDS RESEARCH

Background-dependent effects of polyglutamine variation in the Arabidopsis thaliana gene ELF3

(2012) S. F. Undurraga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Optimization of gene expression by natural selection

(2009) T. Bedford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

THE LOCI OF EVOLUTION: HOW PREDICTABLE IS GENETIC EVOLUTION?

(2008) David L. Stern et al.   EVOLUTION

Regulatory changes underlying expression differences within and between Drosophila species

(2008) Patricia J Wittkopp et al.   NATURE GENETICS