Bacteriomic Analyses of Asian Citrus Psyllid and Citrus Samples Infected With “Candidatus Liberibacter asiaticus” in Southern California and Huanglongbing Management Implications

An in vitro pipeline to screen and select citrus-associated microbiota with potential anti-Candidatus Liberibacter asiaticus properties

(2020) Alex Blacutt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of the bacterial communities of psyllids associated with Rutaceae in Bhutan by high throughput sequencing

(2020) Jennifer L. Morrow et al.   BMC MICROBIOLOGY

Enhancing PCR capacity to detect “Candidatus Liberibacter asiaticus” utilizing whole genome sequence information

(2019) Minli Bao et al.   PLANT DISEASE

16S rRNA Gene Sequencing Reveals a Shift in the Microbiota of Diaphorina citri During the Psyllid Life Cycle

(2019) Lixue Meng et al.   Frontiers in Microbiology

A Type 3 Prophage of ‘Candidatus Liberibacter asiaticus’ Carrying a Restriction-Modification System

(2018) Zheng Zheng et al.   PHYTOPATHOLOGY

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

(2018) Gherman V. Uritskiy et al.   Microbiome

Prophage Diversity of “Candidatus Liberibacter asiaticus” Strains in California

(2018) Zehan Dai et al.   PHYTOPATHOLOGY

Biological Control of Pierce’s Disease of Grape by an Endophytic Bacterium

(2018) Clelia Baccari et al.   PHYTOPATHOLOGY

Bradyrhizobium isolated from huanglongbing (HLB) affected citrus trees reacts positively with primers for Candidatus Liberibacter asiaticus

(2017) Keumchul Shin et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Two ‘Candidatus Liberibacter asiaticus’ Strains Recently Found in California Harbor Different Prophages

(2017) Z. Zheng et al.   PHYTOPATHOLOGY

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

(2017) Yunzeng Zhang et al.   Microbiome

Analyses of Mitogenome Sequences Revealed that Asian Citrus Psyllids (Diaphorina citri) from California Were Related to Those from Florida

(2017) Fengnian Wu et al.   Scientific Reports

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Unusual Five Copies and Dual Forms of nrdB in “Candidatus Liberibacter asiaticus”: Biological Implications and PCR Detection Application

(2016) Zheng Zheng et al.   Scientific Reports

Internal Extracellular Bacteria of Diaphorina citri Kuwayama (Hemiptera: Psyllidae), the Asian Citrus Psyllid

(2015) Lakshmi D. Kolora et al.   CURRENT MICROBIOLOGY

Characterization of “Candidatus Liberibacter Asiaticus” Populations by Double-Locus Analyses

(2014) X. Deng et al.   CURRENT MICROBIOLOGY

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

(2014) G Albert Wu et al.   NATURE BIOTECHNOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Characterization of the microbial community structure in Candidatus Liberibacter asiaticus-infected citrus plants treated with antibiotics in the field

(2013) Muqing Zhang et al.   BMC MICROBIOLOGY

Defensive Bacteriome Symbiont with a Drastically Reduced Genome

(2013) Atsushi Nakabachi et al.   CURRENT BIOLOGY

Detection and Characterization of Miniature Inverted-Repeat Transposable Elements in "Candidatus Liberibacter asiaticus"

(2013) X. Wang et al.   JOURNAL OF BACTERIOLOGY

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

First Report of Candidatus Liberibacter asiaticus Associated with Citrus Huanglongbing in California

(2012) L. B. Kumagai et al.   PLANT DISEASE

Huanglongbing, a Systemic Disease, Restructures the Bacterial Community Associated with Citrus Roots

(2010) P. Trivedi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

‘Ca.Liberibacter asiaticus’ Carries an Excision Plasmid Prophage and a Chromosomally Integrated Prophage That Becomes Lytic in Plant Infections

(2010) Shujian Zhang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Guangdong and Florida Populations of ‘CandidatusLiberibacter asiaticus’ Distinguished by a Genomic Locus with Short Tandem Repeats

(2010) J. Chen et al.   PHYTOPATHOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS