Laboratory Stock Variants of the Archetype Silver Resistance Plasmid pMG101 Demonstrate Plasmid Fusion, Loss of Transmissibility, and Transposition of Tn7/pco/sil Into the Host Chromosome

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Emergence of blaNDM-1 Harboring Klebsiella pneumoniae ST29 and ST11 in Veterinary Settings and Waste of Pakistan

(2020) Tamoor Hamid Chaudhry et al.   Infection and Drug Resistance

Crosstalk between bacterial conjugation and motility is mediated by plasmid‐borne regulators

(2019) Ainara Luque et al.   Environmental Microbiology Reports

Expression of a novel class of bacterial Ig-like proteins is required for IncHI plasmid conjugation

(2019) Mário Hüttener et al.   PLoS Genetics

pSTM6-275, a Conjugative IncHI2 Plasmid of Salmonella enterica That Confers Antibiotic and Heavy-Metal Resistance under Changing Physiological Conditions

(2018) Helen Billman-Jacobe et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae

(2018) M Rozwandowicz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Transmissible ST3-IncHI2 Plasmids Are Predominant Carriers of Diverse Complex IS26-Class 1 Integron Arrangements in Multidrug-Resistant Salmonella

(2018) Hang Zhao et al.   Frontiers in Microbiology

Distribution of the pco Gene Cluster and Associated Genetic Determinants among Swine Escherichia coli from a Controlled Feeding Trial

(2018) Gabhan Chalmers et al.   Genes

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Antimicrobial Resistance of Salmonella enterica Serovar Typhimurium in Shanghai, China

(2017) Jinyan Wang et al.   Frontiers in Microbiology

Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction

(2017) Sébastien Matamoros et al.   Scientific Reports

IncHI2 Plasmids Are the Key Vectors Responsible foroqxABTransmission among Salmonella Species

(2016) Marcus Ho-yin Wong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Evolution of a heavy metal homeostasis/resistance island reflects increasing copper stress in Enterobacteria

(2016) Benjamin M. Staehlin et al.   Genome Biology and Evolution

Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection

(2016) Li-Guan Li et al.   ISME Journal

Co-spread of metal and antibiotic resistance within ST3-IncHI2 plasmids from E. coli isolates of food-producing animals

(2016) Liangxing Fang et al.   Scientific Reports

Survival in amoeba—a major selection pressure on the presence of bacterial copper and zinc resistance determinants? Identification of a “copper pathogenicity island”

(2015) Xiuli Hao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

(2015) Chandan Pal et al.   BMC GENOMICS

Combined Toxic Effects of Heavy Metals and Antibiotics on a Pseudomonas fluorescens Strain ZY2 Isolated from Swine Wastewater

(2015) Yan Zhou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Silver resistance in Gram-negative bacteria: a dissection of endogenous and exogenous mechanisms

(2015) C. P. Randall et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Bacterial antimicrobial metal ion resistance

(2015) Jon L. Hobman et al.   JOURNAL OF MEDICAL MICROBIOLOGY

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

Application of a bacteriophage cocktail to reduce Salmonella Typhimurium U288 contamination on pig skin

(2011) Steven P.T. Hooton et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Whole-Genome Analysis ofSalmonella entericaSerovar Typhimurium T000240 Reveals the Acquisition of a Genomic Island Involved in Multidrug Resistance via IS1Derivatives on the Chromosome

(2010) Hidemasa Izumiya et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Read Length and Repeat Resolution: Exploring Prokaryote Genomes Using Next-Generation Sequencing Technologies

(2010) Matt J. Cahill et al.   PLoS One

Characterization of the TnsD-attTn7 complex that promotes site-specific insertion of Tn7

(2010) Rupak Mitra et al.   Mobile DNA