In silico analysis of the transcriptional regulatory logic of neuronal identity specification throughout the C. elegans nervous system

The Prop1-like homeobox gene unc-42 specifies the identity of synaptically connected neurons

(2021) Emily G Berghoff et al.   eLife

Brn3/POU‐IV‐type POU homeobox genes—Paradigmatic regulators of neuronal identity across phylogeny

(2020) Eduardo Leyva‐Díaz et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Unique homeobox codes delineate all the neuron classes of C. elegans

(2020) Molly B. Reilly et al.   NATURE

Similarity regression predicts evolution of transcription factor sequence specificity

(2019) Samuel A. Lambert et al.   NATURE GENETICS

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Genomic Resolution of DLX-Orchestrated Transcriptional Circuits Driving Development of Forebrain GABAergic Neurons

(2019) Susan Lindtner et al.   Cell Reports

A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes

(2019) Joo Lee et al.   eLife

Single cell transcriptomics in neuroscience: cell classification and beyond

(2018) Bosiljka Tasic   CURRENT OPINION IN NEUROBIOLOGY

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Unconventional function of an Achaete-Scute homolog as a terminal selector of nociceptive neuron identity

(2018) Neda Masoudi et al.   PLOS BIOLOGY

BRN3-type POU Homeobox Genes Maintain the Identity of Mature Postmitotic Neurons in Nematodes and Mice

(2018) Esther Serrano-Saiz et al.   CURRENT BIOLOGY

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Regulatory Mechanisms Controlling Maturation of Serotonin Neuron Identity and Function

(2017) William C. Spencer et al.   Frontiers in Cellular Neuroscience

Cooperative interactions enable singular olfactory receptor expression in mouse olfactory neurons

(2017) Kevin Monahan et al.   eLife

Revisiting Neuronal Cell Type Classification in Caenorhabditis elegans

(2016) Oliver Hobert et al.   CURRENT BIOLOGY

Survey of variation in human transcription factors reveals prevalent DNA binding changes

(2016) L. A. Barrera et al.   SCIENCE

A cellular and regulatory map of the GABAergic nervous system of C. elegans

(2016) Marie Gendrel et al.   eLife

A map of terminal regulators of neuronal identity in Caenorhabditis elegans

(2016) Oliver Hobert   Wiley Interdisciplinary Reviews-Developmental Biology

A Competition Mechanism for a Homeotic Neuron Identity Transformation in C. elegans

(2015) Patricia M. Gordon et al.   DEVELOPMENTAL CELL

The Evolutionarily Conserved LIM Homeodomain Protein LIM-4/LHX6 Specifies the Terminal Identity of a Cholinergic and Peptidergic C. elegans Sensory/Inter/Motor Neuron-Type

(2015) Jinmahn Kim et al.   PLoS Genetics

Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities

(2015) Kamesh Narasimhan et al.   eLife

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

(2015) Kazuhiro R Nitta et al.   eLife

A cellular and regulatory map of the cholinergic nervous system of C. elegans

(2015) Laura Pereira et al.   eLife

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

TargetOrtho: A Phylogenetic Footprinting Tool to Identify Transcription Factor Targets

(2014) Lori Glenwinkel et al.   GENETICS

Maintenance of postmitotic neuronal cell identity

(2014) Evan S Deneris et al.   NATURE NEUROSCIENCE

Modular Control of Glutamatergic Neuronal Identity in C. elegans by Distinct Homeodomain Proteins

(2013) Esther Serrano-Saiz et al.   CELL

A combinatorial regulatory signature controls terminal differentiation of the dopaminergic nervous system in C. elegans

(2013) M. Doitsidou et al.   GENES & DEVELOPMENT

BEDOPS: high-performance genomic feature operations

(2012) Shane Neph et al.   BIOINFORMATICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Coordinated regulation of cholinergic motor neuron traits through a conserved terminal selector gene

(2011) Paschalis Kratsios et al.   NATURE NEUROSCIENCE

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors

(2010) J. C. Corbo et al.   GENOME RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Regulatory logic of neuronal diversity: Terminal selector genes and selector motifs

(2008) O. Hobert   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA