4.8 Article

Sensory coding and the causal impact of mouse cortex in a visual decision

Journal

ELIFE
Volume 10, Issue -, Pages -

Publisher

ELIFE SCIENCES PUBLICATIONS LTD
DOI: 10.7554/eLife.63163

Keywords

-

Categories

Funding

  1. Wellcome Trust [095668, 095669]
  2. Human FrontiersScience Program [LT001071]
  3. Horizon 2020 [656528]
  4. Engineering and Physical Sciences Research Council CoMPLEX PhD studentship
  5. European Research Council [694401]
  6. European Research Council (ERC) [694401] Funding Source: European Research Council (ERC)

Ask authors/readers for more resources

Correlates of sensory stimuli and motor actions are found in multiple cortical areas, but only the sensory signals localized in visual and frontal cortex play a causal role in task performance, while widespread dorsal cortical signals correlating with movement reflect processes that do not play a causal role.
Correlates of sensory stimuli and motor actions are found in multiple cortical areas, but such correlates do not indicate whether these areas are causally relevant to task performance. We trained mice to discriminate visual contrast and report their decision by steering a wheel. Widefield calcium imaging and Neuropixels recordings in cortex revealed stimulus-related activity in visual (VIS) and frontal (MOs) areas, and widespread movement-related activity across the whole dorsal cortex. Optogenetic inactivation biased choices only when targeted at VIS and MOs, proportionally to each site's encoding of the visual stimulus, and at times corresponding to peak stimulus decoding. A neurometric model based on summing and subtracting activity in VIS and MOs successfully described behavioral performance and predicted the effect of optogenetic inactivation. Thus, sensory signals localized in visual and frontal cortex play a causal role in task performance, while widespread dorsal cortical signals correlating with movement reflect processes that do not play a causal role.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Neurosciences

The importance of accounting for movement when relating neuronal activity to sensory and cognitive processes

Edward Zagha, Jeffrey C. Erlich, Soohyun Lee, Gyorgy Lur, Daniel H. O'Connor, Nicholas A. Steinmetz, Carsen Stringer, Hongdian Yang

Summary: Recent studies have found that movement-related activity is present throughout the mouse brain, including early sensory areas. Failing to consider movement when interpreting neuronal function may lead to misattributing activity to other processes. Functional couplings between movement and other activities make it difficult to fully isolate sensory, motor, and cognitive-related activity.

JOURNAL OF NEUROSCIENCE (2022)

Article Multidisciplinary Sciences

Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex

Yan-Liang Shi, Nicholas A. Steinmetz, Tirin Moore, Kwabena Boahen, Tatiana A. Engel

Summary: Correlated activity fluctuations in the neocortex influence sensory responses and behavior. We measured correlations within columns in the visual cortex and found that these correlations can be explained by columnar On-Off dynamics. Our study reveals how the interactions between cortical state dynamics, anatomical connectivity, and attention give rise to spatially structured patterns of correlated variability.

NATURE COMMUNICATIONS (2022)

Article Neurosciences

Disruption of VGLUT1 in Cholinergic Medial Habenula Projections Increases Nicotine Self-Administration

Elizabeth A. Souter, Yen-Chu Chen, Vivien Zell, Valeria Lallai, Thomas Steinkellner, William S. Conrad, William Wisden, Kenneth D. Harris, Christie D. Fowler, Thomas S. Hnasko

Summary: This study demonstrates that glutamate corelease from cholinergic neurons in the medial habenula opposes nicotine self-administration, providing further support for targeting this synapse to develop potential treatments for nicotine addiction.

ENEURO (2022)

Article Neurosciences

Neural correlates of blood flow measured by ultrasound

Anwar O. Nunez-Elizalde, Michael Krumin, Charu Bai Reddy, Gabriel Montaldo, Alan Urban, Kenneth D. Harris, Matteo Carandini

Summary: Functional ultrasound imaging (fUSI) is an effective method for measuring blood flow and inferring brain activity, showing a strong correlation with slow fluctuations in neural firing rate. The study found that fUSI signals are accurately predicted by the smoothed firing rate of local neurons, particularly inhibitory neurons, and match neural firing spatially across different brain regions.

NEURON (2022)

Article Multidisciplinary Sciences

A transcriptomic axis predicts state modulation of cortical interneurons

Stephane Bugeon, Joshua Duffield, Mario Dipoppa, Anne Ritoux, Isabelle Prankerd, Dimitris Nicoloutsopoulos, David Orme, Maxwell Shinn, Han Peng, Hamish Forrest, Aiste Viduolyte, Charu Bai Reddy, Yoh Isogai, Matteo Carandini, Kenneth D. Harris

Summary: This study reveals that inhibitory subtypes in the primary visual cortex exhibit diverse correlates with brain state. These subtypes' activity patterns are organized by the main axis of transcriptomic variation. Different subtypes show significant differences in response to visual stimuli, as well as modulation by brain state. These findings highlight the importance of inhibitory neurons in cortical processing.

NATURE (2022)

Editorial Material Neurosciences

Emerging principles of spacetime in brains: Meeting report on spatial neurodynamics

Sonja Gruen, Jennifer Li, Bruce McNaughton, Carl Petersen, David McCormick, Drew Robson, Gyorgy Buzsaki, Kenneth Harris, Terrence Sejnowski, Thomas Mrsic-Flogel, Henrik Linden, Per E. Roland

Summary: This article provides an overview of recent discoveries on the spatial interaction between neurons and networks of neurons, and explains the importance of these interactions in fundamental brain and brainstem mechanisms underlying detection, perception, learning, and behavior.

NEURON (2022)

Article Neurosciences

Report Task specificity in mouse parietal cortex

Julie J. Lee, Michael Krumin, Kenneth D. Harris, Matteo Carandini

Summary: Participation of neurons in the parietal cortex is task-specific, which is determined by the physical context.

NEURON (2022)

Correction Multidisciplinary Sciences

A transcriptomic axis predicts state modulation of cortical interneurons (Aug, 10.1038/s41586-022-04915-7, 2022)

Stephane Bugeon, Joshua Duffield, Mario Dipoppa, Anne Ritoux, Isabelle Prankerd, Dimitris Nicoloutsopoulos, David Orme, Maxwell Shinn, Han Peng, Hamish Forrest, Aiste Viduolyte, Charu Bai Reddy, Yoh Isogai, Matteo Carandini, Kenneth D. Harris

NATURE (2022)

Article Cell Biology

Visuomotor learning promotes visually evoked activity in the medial prefrontal cortex

Andrew J. Peters, Andrada-Maria Marica, Julie M. J. Fabre, Kenneth D. Harris, Matteo Carandini

Summary: This study reveals that learning a motor task promotes a pathway for visual information to reach the prefrontal cortex, and the correlation between the cortical response to stimuli and the learned movements increases gradually during training.

CELL REPORTS (2022)

Article Neurosciences

Behavioral origin of sound-evoked activity in mouse visual cortex

Celian Bimbard, Timothy P. H. Sit, Anna Lebedeva, Charu B. B. Reddy, Kenneth D. D. Harris, Matteo Carandini

Summary: Sensory cortices are considered to be multisensory, as they can be influenced by stimuli of multiple modalities. This study shows that the activity evoked by sounds in the primary visual cortex (V1) is stereotyped across neurons and mice, independent of projections from the auditory cortex. The low-dimensional nature of this activity contrasts with the high-dimensional code used by V1 for representing images. Furthermore, the sound-evoked activity can be accurately predicted by small body movements that are consistent across trials and mice, suggesting that apparent multisensory neural activity may arise from low-dimensional signals associated with internal state and behavior.

NATURE NEUROSCIENCE (2023)

Article Multidisciplinary Sciences

Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity

Roxana Zeraati, Yan-Liang Shi, Nicholas A. Steinmetz, Marc A. Gieselmann, Alexander Thiele, Tirin Moore, Anna Levina, Tatiana A. Engel

Summary: This study investigates the changes in intrinsic timescales during cognitive tasks. The authors demonstrate that intrinsic timescales of neural activity in the visual cortex change with spatial attention. The results suggest that attentional modulation of timescales is due to changes in the efficacy of recurrent interactions.

NATURE COMMUNICATIONS (2023)

Article Biology

A stable, distributed code for cue value in mouse cortex during reward learning

David J. Ottenheimer, Madelyn M. Hjort, Anna J. Bowen, Nicholas A. Steinmetz, Garret D. Stuber

Summary: This study demonstrates the stable encoding of cue-reward learning by individual prefrontal neurons and reveals a certain advantage of the prefrontal cortex in value coding.

ELIFE (2023)

Article Computer Science, Artificial Intelligence

A scale-dependent measure of system dimensionality

Stefano Recanatesi, Serena Bradde, Vijay Balasubramanian, Nicholas A. Steinmetz, Eric Shea-Brown

Summary: This passage introduces a scale-dependent participation ratio method to determine the dimensionality of systems at different scales, which can be applied to various systems and studies of brain activity.

PATTERNS (2022)

No Data Available