The piggyBac transposon-derived genes TPB1 and TPB6 mediate essential transposon-like excision during the developmental rearrangement of key genes in Tetrahymena thermophila

Dynamic distributions of long double-stranded RNA inTetrahymenaduring nuclear development and genome rearrangements

(2016) Tai-Ting Woo et al.   JOURNAL OF CELL SCIENCE

Phosphorylation of an HP1-like protein is a prerequisite for heterochromatin body formation inTetrahymenaDNA elimination

(2016) Kensuke Kataoka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Programmed Minichromosome Elimination as a Mechanism for Somatic Genome Reduction in Tetrahymena thermophila

(2016) Chih-Yi Gabriela Lin et al.   PLoS Genetics

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

(2016) Eileen P Hamilton et al.   eLife

Phosphorylation of an HP1-like Protein Regulates Heterochromatin Body Assembly for DNA Elimination

(2015) Kensuke Kataoka et al.   DEVELOPMENTAL CELL

Small-RNA-Mediated Genome-wide trans -Recognition Network in Tetrahymena DNA Elimination

(2015) Tomoko Noto et al.   MOLECULAR CELL

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

The VF rat with abnormal myelinogenesis has a mutation inDopey1

(2014) Miyuu Tanaka et al.   GLIA

Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response

(2013) Bayly S. Wheeler   CHROMOSOME RESEARCH

LIA5 Is Required for Nuclear Reorganization and Programmed DNA Rearrangements Occurring during Tetrahymena Macronuclear Differentiation

(2013) Annie Wan Yi Shieh et al.   PLoS One

piggyBac transposase tools for genome engineering

(2013) X. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Domesticated PiggyBac Transposase Interacts with Heterochromatin and Catalyzes Reproducible DNA Elimination in Tetrahymena

(2013) Alexander Vogt et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Reprogramming and the mammalian germline: the Weismann barrier revisited

(2012) Davood Sabour et al.   CURRENT OPINION IN CELL BIOLOGY

Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena

(2012) U. E. Schoeberl et al.   GENES & DEVELOPMENT

An essential role for the DNA breakage-repair protein Ku80 in programmed DNA rearrangements in Tetrahymena thermophila

(2012) I-Ting Lin et al.   MOLECULAR BIOLOGY OF THE CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Transcriptome Analysis of the Model Protozoan, Tetrahymena thermophila, Using Deep RNA Sequencing

(2012) Jie Xiong et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

DNA Elimination in Ciliates: Transposon Domestication and Genome Surveillance

(2011) Douglas L. Chalker et al.   Annual Review of Genetics

Zygotic Expression of the Double-Stranded RNA Binding Motif Protein Drb2p Is Required for DNA Elimination in the Ciliate Tetrahymena thermophila

(2011) Jason A. Motl et al.   EUKARYOTIC CELL

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila

(2011) Joseph N. Fass et al.   G3-Genes Genomes Genetics

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

A Domesticated piggyBac Transposase Plays Key Roles in Heterochromatin Dynamics and DNA Cleavage during Programmed DNA Deletion in Tetrahymena thermophila

(2010) Chao-Yin Cheng et al.   MOLECULAR BIOLOGY OF THE CELL

Oligomeric Dop1p is Part of the Endosomal Neo1p-Ysl2p-Arl1p Membrane Remodeling Complex

(2010) Sónia Barbosa et al.   TRAFFIC

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia

(2009) C. Baudry et al.   GENES & DEVELOPMENT

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

A Functional Role for Transposases in a Large Eukaryotic Genome

(2009) M. Nowacki et al.   SCIENCE

High efficiency transformation of Tetrahymena using a codon-optimized neomycin resistance gene

(2008) Kazufumi Mochizuki   GENE