Genome-wide comparative analyses of GATA transcription factors among seven Populus genomes

Genome-Wide Characterization, Evolution, and Expression Profile Analysis of GATA Transcription Factors in Brachypodium distachyon

(2021) Weiye Peng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide identification and function characterization of GATA transcription factors during development and in response to abiotic stresses and hormone treatments in pepper

(2021) Chuying Yu et al.   JOURNAL OF APPLIED GENETICS

Genome-wide comparative analyses of GATA transcription factors among 19 Arabidopsis ecotype genomes: Intraspecific characteristics of GATA transcription factors

(2021) Mangi Kim et al.   PLoS One

Phylogenetic position of Daphne genkwa (Thymelaeaceae) inferred from complete chloroplast data

(2021) Su-Chang YOO et al.   Korean Journal of Plant Taxonomy

The complete mitochondrial genome of Arabidopsis thaliana (Brassicaceae) isolated in Korea

(2021) Jongsun PARK et al.   Korean Journal of Plant Taxonomy

Comprehensive Analyses of the Complete Mitochondrial Genome of Figulus binodulus (Coleoptera: Lucanidae)

(2020) Jungmo Lee et al.   JOURNAL OF INSECT SCIENCE

The GATA Gene Family in Chickpea: Structure Analysis and Transcriptional Responses to Abscisic Acid and Dehydration Treatments Revealed Potential Genes Involved in Drought Adaptation

(2020) Liangjie Niu et al.   JOURNAL OF PLANT GROWTH REGULATION

Complete chloroplast genome sequence of Populus pruinosa Schrenk from PacBio Sequel II Platform

(2020) Zhong-Shuai Gai et al.   Mitochondrial DNA Part B-Resources

Plastome Sequences Help to Resolve Deep-Level Relationships of Populus in the Family Salicaceae

(2019) Dan Zong et al.   Frontiers in Plant Science

Transcriptome analysis of transcription factor genes under multiple abiotic stresses in Populus simonii × P.nigra

(2019) Wenjing Yao et al.   GENE

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Phylogenomics of the genus Populus reveals extensive interspecific gene flow and balancing selection

(2019) Mingcheng Wang et al.   NEW PHYTOLOGIST

Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula)

(2019) Rami-Petteri Apuli et al.   G3-Genes Genomes Genetics

A GATA transcription factor PdGNC plays an important role in photosynthesis and growth in Populus

(2019) Yi An et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis

(2018) Emmanouil Bastakis et al.   PLANT CELL

Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families

(2018) Yan Zubo et al.   PLANT PHYSIOLOGY

Genome-wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria × ananassa fruits

(2018) Enriqueta Moyano et al.   PLoS One

Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response

(2018) Zhan Zhang et al.   GENOME

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

(2018) Yao-Cheng Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants

(2018) Asuka Higo et al.   Nature Communications

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

Hardwood Tree Genomics: Unlocking Woody Plant Biology

(2018) Gerald A. Tuskan et al.   Frontiers in Plant Science

Genome-wide identification, evolution, and expression analysis of GATA transcription factors in apple ( Malus × domestica Borkh.)

(2017) Hongfei Chen et al.   GENE

Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors

(2017) Hong Han et al.   MOLECULAR CELL

Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice

(2017) Priyanka Gupta et al.   Frontiers in Plant Science

Genome-wide in silico identification of membrane-bound transcription factors in plant species

(2017) Shixiang Yao et al.   PeerJ

LLM-Domain B-GATA Transcription Factors Promote Stomatal Development Downstream of Light Signaling Pathways inArabidopsis thalianaHypocotyls

(2016) Carina Klermund et al.   PLANT CELL

LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development inArabidopsis thaliana

(2016) Quirin L. Ranftl et al.   PLANT PHYSIOLOGY

Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding

(2016) Birgit Kersten et al.   PLoS One

Genome-wide characterization and analysis of bZIP transcription factor gene family related to abiotic stress in cassava

(2016) Wei Hu et al.   Scientific Reports

OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes

(2015) Kai Xu et al.   BMC PLANT BIOLOGY

Genome-Wide Survey of the Soybean GATA Transcription Factor Gene Family and Expression Analysis under Low Nitrogen Stress

(2015) Chanjuan Zhang et al.   PLoS One

Exploiting genome variation to improve next-generation sequencing data analysis and genome editing efficiency in Populus tremula × alba 717-1B4

(2015) Liang-Jiao Xue et al.   Tree Genetics & Genomes

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

NAC transcription factor gene regulatory and protein-protein interaction networks in plant stress responses and senescence

(2014) Michael K. Jensen et al.   IUBMB LIFE

The complete chloroplast genome sequence of desert poplar (Populus euphratica)

(2014) Qun-jie Zhang et al.   Mitochondrial DNA

Genome-wide analysis of the GRAS gene family in Prunus mume

(2014) Jiuxing Lu et al.   MOLECULAR GENETICS AND GENOMICS

Poplar GATA transcription factor PdGNC is capable of regulating chloroplast ultrastructure, photosynthesis, and vegetative growth in Arabidopsis under varying nitrogen levels

(2014) Yi An et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Genome-Wide Analysis of the bZIP Transcription Factors in Cucumber

(2014) Mehmet Cengiz Baloglu et al.   PLoS One

Phylogeny Reconstruction and Hybrid Analysis of Populus (Salicaceae) Based on Nucleotide Sequences of Multiple Single-Copy Nuclear Genes and Plastid Fragments

(2014) Zhaoshan Wang et al.   PLoS One

Genome-wide analysis of the GRAS gene family in Chinese cabbage (Brassica rapa ssp. pekinensis)

(2013) Xiao-Ming Song et al.   GENOMICS

Recent advances in plant membrane-bound transcription factor research: Emphasis on intracellular movement

(2013) Pil Joon Seo   Journal of Integrative Plant Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis)

(2013) Xiao-Ming Song et al.   MOLECULAR GENETICS AND GENOMICS

Transcription Repressor HANABA TARANU Controls Flower Development by Integrating the Actions of Multiple Hormones, Floral Organ Specification Genes, and GATA3 Family Genes inArabidopsis

(2013) Xiaolan Zhang et al.   PLANT CELL

Rice Cytokinin GATA Transcription Factor1 Regulates Chloroplast Development and Plant Architecture

(2013) D. Hudson et al.   PLANT PHYSIOLOGY

Cross-Repressive Interactions between SOC1 and the GATAs GNC and GNL/CGA1 in the Control of Greening, Cold Tolerance, and Flowering Time in Arabidopsis

(2013) R. Richter et al.   PLANT PHYSIOLOGY

Convergence of auxin and gibberellin signaling on the regulation of the GATA transcription factors GNC and GNL in Arabidopsis thaliana

(2013) R. Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome wide analysis of the NAC transcription factor family in Chinese cabbage to elucidate responses to temperature stress

(2013) Jing Ma et al.   SCIENTIA HORTICULTURAE

Stable establishment of cotyledon identity during embryogenesis in Arabidopsis by ANGUSTIFOLIA3 and HANABA TARANU

(2012) M. Kanei et al.   DEVELOPMENT

Genome-Wide Analysis of bZIP-Encoding Genes in Maize

(2012) K. Wei et al.   DNA RESEARCH

Function of alternative splicing

(2012) Olga Kelemen et al.   GENE

OsDof25 expression alters carbon and nitrogen metabolism in Arabidopsis under high N-supply

(2012) Leandro Azevedo Santos et al.   Plant Biotechnology Reports

The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis

(2012) J. Shaikhali et al.   PLANT CELL

Functional Characterization of the GATA Transcription Factors GNC and CGA1 Reveals Their Key Role in Chloroplast Development, Growth, and Division in Arabidopsis

(2012) Y.-H. Chiang et al.   PLANT PHYSIOLOGY

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor

(2012) J. M. Gendron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NAC transcription factors in plant abiotic stress responses

(2011) Kazuo Nakashima et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Populus Class III HD ZIP Transcription Factor POPCORONA Affects Cell Differentiation during Secondary Growth of Woody Stems

(2011) Juan Du et al.   PLoS One

GNC and CGA1 Modulate Chlorophyll Biosynthesis and Glutamate Synthase (GLU1/Fd-GOGAT) Expression in Arabidopsis

(2011) Darryl Hudson et al.   PLoS One

The GATA Factor HANABA TARANU Is Required to Position the Proembryo Boundary in the Early Arabidopsis Embryo

(2010) Tal Nawy et al.   DEVELOPMENTAL CELL

Genome-wide analysis of NAC transcription factor family in rice

(2010) Mohammed Nuruzzaman et al.   GENE

The GATA-type transcription factors GNC and GNL/CGA1 repress gibberellin signaling downstream from DELLA proteins and PHYTOCHROME-INTERACTING FACTORS

(2010) R. Richter et al.   GENES & DEVELOPMENT

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments

(2009) Bo Yang et al.   BMC PLANT BIOLOGY

In silico Analysis of Transcription Factor Repertoire and Prediction of Stress Responsive Transcription Factors in Soybean

(2009) K. Mochida et al.   DNA RESEARCH

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins

(2009) Andrea Chini et al.   PLANT JOURNAL

Drought tolerance in Arabidopsis is controlled by theOCP3disease resistance regulator

(2009) Vicente Ramírez et al.   PLANT JOURNAL

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa

(2008) Jing Zhuang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Identification of an Arabidopsis transmembrane bZIP transcription factor involved in the endoplasmic reticulum stress response

(2008) Hiromi Tajima et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A critical role of two positively charged amino acids in the Jas motif of Arabidopsis JAZ proteins in mediating coronatine- and jasmonoyl isoleucine-dependent interactions with the COI1 F-box protein

(2008) Maeli Melotto et al.   PLANT JOURNAL

A membrane-bound NAC transcription factor NTL8 regulates gibberellic acid-mediated salt signaling in Arabidopsis seed germination

(2008) Sang-Gyu Kim et al.   PLANT JOURNAL

Two GATA Transcription Factors Are Downstream Effectors of Floral Homeotic Gene Action in Arabidopsis

(2008) C. D. Mara et al.   PLANT PHYSIOLOGY

A membrane-tethered transcription factor defines a branch of the heat stress response in Arabidopsis thaliana

(2008) H. Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA