HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP
Authors
Keywords
-
Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-06-07
DOI
10.1038/s41467-021-23749-x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Measuring significant changes in chromatin conformation with ACCOST
- (2020) Kate B Cook et al. NUCLEIC ACIDS RESEARCH
- Ultrastructural Details of Mammalian Chromosome Architecture
- (2020) Nils Krietenstein et al. MOLECULAR CELL
- multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments
- (2019) John C Stansfield et al. BIOINFORMATICS
- MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
- (2019) Ivan Juric et al. PLoS Computational Biology
- Selfish: discovery of differential chromatin interactions via a self-similarity measure
- (2019) Abbas Roayaei Ardakany et al. BIOINFORMATICS
- KLF4 is involved in the organization and regulation of pluripotency-associated three-dimensional enhancer networks
- (2019) Dafne Campigli Di Giammartino et al. NATURE CELL BIOLOGY
- Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations
- (2019) Charles P. Fulco et al. NATURE GENETICS
- Identification of significant chromatin contacts from HiChIP data by FitHiChIP
- (2019) Sourya Bhattacharyya et al. Nature Communications
- hichipper: a preprocessing pipeline for calling DNA loops from HiChIP data
- (2018) Caleb A Lareau et al. NATURE METHODS
- High-resolution TADs reveal DNA sequences underlying genome organization in flies
- (2018) Fidel Ramírez et al. Nature Communications
- Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development
- (2017) Douglas H. Phanstiel et al. MOLECULAR CELL
- An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data
- (2017) Mark Carty et al. Nature Communications
- HiChIP: efficient and sensitive analysis of protein-directed genome architecture
- (2016) Maxwell R Mumbach et al. NATURE METHODS
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
- (2016) Neva C. Durand et al. Cell Systems
- Mango: a bias-correcting ChIA-PET analysis pipeline
- (2015) Douglas H. Phanstiel et al. BIOINFORMATICS
- diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data
- (2015) Aaron T.L. Lun et al. BMC BIOINFORMATICS
- Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
- (2015) Tsung-Han S. Hsieh et al. CELL
- TopDom: an efficient and deterministic method for identifying topological domains in genomes
- (2015) Hanjun Shin et al. NUCLEIC ACIDS RESEARCH
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
- (2014) Jim R Hughes et al. NATURE GENETICS
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation