Whole-genome resequencing of 240 Gossypium barbadense accessions reveals genetic variation and genes associated with fiber strength and lint percentage

Divergent improvement of two cultivated allotetraploid cotton species

(2021) Lei Fang et al.   PLANT BIOTECHNOLOGY JOURNAL

QTL analysis of agronomic, fiber quality, and abiotic stress tolerance traits in a recombinant inbred population of pima cotton

(2020) Abdelraheem Abdelraheem et al.   CROP SCIENCE

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

(2020) Z. Jeffrey Chen et al.   NATURE GENETICS

High‐density genetic variation maps reveal the correlation between asymmetric interspecific introgressions and improvement of agronomic traits in Upland and Pima cotton varieties developed in Xinjiang, China

(2020) Xinhui Nie et al.   PLANT JOURNAL

Genome-wide association analysis reveals loci and candidate genes involved in fiber quality traits in sea island cotton (Gossypium barbadense)

(2020) Xiujuan Su et al.   BMC PLANT BIOLOGY

Glyphosate-tolerant cotton in Australia: successes and failures

(2019) Nadeem Iqbal et al.   Archives of Agronomy and Soil Science

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

(2019) Yan Hu et al.   NATURE GENETICS

Genome‐wide quantitative trait loci reveal the genetic basis of cotton fibre quality and yield‐related traits in a Gossypium hirsutum recombinant inbred line population

(2019) Zhen Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of candidate genes for key fibre‐related QTL s and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions

(2019) Furong Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

A high-density genetic map of extra-long staple cotton (Gossypium barbadense) constructed using genotyping-by-sequencing based single nucleotide polymorphic markers and identification of fiber traits-related QTL in a recombinant inbred line population

(2018) Liping Fan et al.   BMC GENOMICS

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

(2018) Zhiying Ma et al.   NATURE GENETICS

Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits

(2018) Xiongming Du et al.   NATURE GENETICS

Identification of Introgressed Alleles Conferring High Fiber Quality Derived From Gossypium barbadense L. in Secondary Mapping Populations of G. hirsutum L.

(2018) Yu Chen et al.   Frontiers in Plant Science

Crop genome-wide association study: a harvest of biological relevance

(2018) Hai-Jun Liu et al.   PLANT JOURNAL

Toward the sequence-based breeding in legumes in the post-genome sequencing era

(2018) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits

(2017) Lei Fang et al.   NATURE GENETICS

Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication

(2017) Maojun Wang et al.   NATURE GENETICS

Suppressing a Putative Sterol Carrier Gene Reduces Plasmodesmal Permeability and Activates Sucrose Transporter Genes during Cotton Fiber Elongation

(2017) Zhiyuan Zhang et al.   PLANT CELL

A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice

(2015) Debao Huang et al.   PLANT CELL

A BIL Population Derived from G. hirsutum and G. barbadense Provides a Resource for Cotton Genetics and Breeding

(2015) Xinhui Nie et al.   PLoS One

Constructing a high-density linkage map forGossypium hirsutum × Gossypium barbadenseand identifying QTLs for lint percentage

(2014) Yuzhen Shi et al.   Journal of Integrative Plant Biology

GbTCP, a cotton TCP transcription factor, confers fibre elongation and root hair development by a complex regulating system

(2012) Juan Hao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Inheritance of long staple fiber quality traits of Gossypium barbadense in G. hirsutum background using CSILs

(2012) Peng Wang et al.   THEORETICAL AND APPLIED GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus × domestica) with Erwinia amylovora

(2010) Angela Baldo et al.   BMC PLANT BIOLOGY

Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling

(2010) Cheng Dai et al.   EMBO JOURNAL

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH