Distinct factors drive the diversity and composition of protistan consumers and phototrophs in natural soil ecosystems

Fertilization alters protistan consumers and parasites in crop‐associated microbiomes

(2021) Anqi Sun et al.   ENVIRONMENTAL MICROBIOLOGY

The global-scale distributions of soil protists and their contributions to belowground systems

(2020) Angela M. Oliverio et al.   Science Advances

Oxytetracycline and Ciprofloxacin Exposure Altered the Composition of Protistan Consumers in an Agricultural Soil

(2020) Bao-Anh T. Nguyen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Core Microbiota in Agricultural Soils and Their Potential Associations with Nutrient Cycling

(2019) Shuo Jiao et al.   mSystems

Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations

(2019) Garvin Schulz et al.   Frontiers in Microbiology

Trophic Regulations of the Soil Microbiome

(2019) Madhav P. Thakur et al.   TRENDS IN MICROBIOLOGY

Soil nematode abundance and functional group composition at a global scale

(2019) Johan van den Hoogen et al.   NATURE

Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland

(2019) Anna Maria Fiore-Donno et al.   Frontiers in Microbiology

Soil biota, antimicrobial resistance and planetary health

(2019) Yong-Guan Zhu et al.   ENVIRONMENT INTERNATIONAL

Making sense of environmental sequencing data: Ecologically important functional traits of the protistan groups Cercozoa and Endomyxa (Rhizaria)

(2019) Kenneth Dumack et al.   Molecular Ecology Resources

Global distribution of earthworm diversity

(2019) Helen R. P. Phillips et al.   SCIENCE

Microbial regulation of natural antibiotic resistance: Understanding the protist-bacteria interactions for evolution of soil resistome

(2019) Bao-Anh Thi Nguyen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

(2018) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Nematode grazing promotes bacterial community dynamics in soil at the aggregate level

(2017) Yuji Jiang et al.   ISME Journal

What is a Trophic Cascade?

(2016) William J. Ripple et al.   TRENDS IN ECOLOGY & EVOLUTION

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

(2015) Leho Tedersoo et al.   ISME Journal

Consistent and Clear Reporting of Results from Diverse Modeling Techniques: The A3 Method

(2015) Scott Fortmann-Roe   Journal of Statistical Software

An unexpected role for mixotrophs in the response of peatland carbon cycling to climate warming

(2015) Vincent E. J. Jassey et al.   Scientific Reports

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Protozoan Pulses Unveil Their Pivotal Position Within the Soil Food Web

(2011) Felicity V. Crotty et al.   MICROBIAL ECOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ecological strategies of protists and their symbiotic relationships with prokaryotic microbes

(2009) Rebecca J. Gast et al.   TRENDS IN MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE