Root-o-Mat: A novel tool for 2D image processing of root-soil interactions and its application in soil zymography
Published 2021 View Full Article
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Title
Root-o-Mat: A novel tool for 2D image processing of root-soil interactions and its application in soil zymography
Authors
Keywords
Image referencing tool, Hotspot identification, 2D image processing, Visualization approaches, Image registration, Rhizosphere spatiotemporal organization
Journal
SOIL BIOLOGY & BIOCHEMISTRY
Volume 157, Issue -, Pages 108236
Publisher
Elsevier BV
Online
2021-03-30
DOI
10.1016/j.soilbio.2021.108236
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- (2020) Marcel Gehrung et al. Photoacoustics
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- Soil zymography as a powerful tool for exploring hotspots and substrate limitation in undisturbed subsoil
- (2018) Julian Heitkötter et al. SOIL BIOLOGY & BIOCHEMISTRY
- Spatial patterns of enzyme activities in the rhizosphere: Effects of root hairs and root radius
- (2018) Xiaomin Ma et al. SOIL BIOLOGY & BIOCHEMISTRY
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- (2018) C.D. Giles et al. SOIL BIOLOGY & BIOCHEMISTRY
- Microbial nitrogen mining affects spatio-temporal patterns of substrate-induced respiration during seven years of bare fallow
- (2017) Nele Meyer et al. SOIL BIOLOGY & BIOCHEMISTRY
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- (2017) Maria Mooshammer et al. Science Advances
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- (2016) H.C. Glanville et al. SOIL BIOLOGY & BIOCHEMISTRY
- Enzyme properties down the soil profile - A matter of substrate quality in rhizosphere and detritusphere
- (2016) Sebastian Loeppmann et al. SOIL BIOLOGY & BIOCHEMISTRY
- Small but active - pool size does not matter for carbon incorporation in below-ground food webs
- (2015) Johanna Pausch et al. FUNCTIONAL ECOLOGY
- Substrate quality affects microbial- and enzyme activities in rooted soil
- (2015) Sebastian Loeppmann et al. JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE
- Sugars in soil and sweets for microorganisms: Review of origin, content, composition and fate
- (2015) Anna Gunina et al. SOIL BIOLOGY & BIOCHEMISTRY
- Spatial and temporal dynamics of hotspots of enzyme activity in soil as affected by living and dead roots—a soil zymography analysis
- (2014) Marie Spohn et al. PLANT AND SOIL
- Ecoenzymatic stoichiometry of microbial nutrient acquisition in tropical soils
- (2013) Bonnie Grace Waring et al. BIOGEOCHEMISTRY
- Soil C and N availability determine the priming effect: microbial N mining and stoichiometric decomposition theories
- (2013) Ruirui Chen et al. GLOBAL CHANGE BIOLOGY
- Deformable Medical Image Registration: A Survey
- (2013) A. Sotiras et al. IEEE TRANSACTIONS ON MEDICAL IMAGING
- Zymography methods for visualizing hydrolytic enzymes
- (2013) Jennifer Vandooren et al. NATURE METHODS
- Distribution of microbial- and root-derived phosphatase activities in the rhizosphere depending on P availability and C allocation – Coupling soil zymography with 14C imaging
- (2013) Marie Spohn et al. SOIL BIOLOGY & BIOCHEMISTRY
- Soil zymography – A novel in situ method for mapping distribution of enzyme activity in soil
- (2013) Marie Spohn et al. SOIL BIOLOGY & BIOCHEMISTRY
- The effects of glucose loading rates on bacterial and fungal growth in soil
- (2013) Stephanie Reischke et al. SOIL BIOLOGY & BIOCHEMISTRY
- Evaluation of a novel tool for sampling root exudates from soil-grown plants compared to conventional techniques
- (2012) Eva Oburger et al. ENVIRONMENTAL AND EXPERIMENTAL BOTANY
- Icy: an open bioimage informatics platform for extended reproducible research
- (2012) Fabrice de Chaumont et al. NATURE METHODS
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- Color-to-Grayscale: Does the Method Matter in Image Recognition?
- (2012) Christopher Kanan et al. PLoS One
- Comparison of image segmentation methods in simulated 2D and 3D microtomographic images of soil aggregates
- (2011) W. Wang et al. GEODERMA
- The Michaelis-Menten kinetics of soil extracellular enzymes in response to temperature: a cross-latitudinal study
- (2011) Donovan P. German et al. GLOBAL CHANGE BIOLOGY
- Fast three-dimensional Otsu thresholding with shuffled frog-leaping algorithm
- (2010) Na Wang et al. PATTERN RECOGNITION LETTERS
- Effects of soil properties and management on the activity of soil organic matter transforming enzymes and the quantification of soil-bound and free activity
- (2010) Martina Štursová et al. PLANT AND SOIL
- Phosphorus limitation in a Ferralsol: Impact on microbial activity and cell internal P pools
- (2009) Knut Ehlers et al. SOIL BIOLOGY & BIOCHEMISTRY
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