Characterization of the fecal microbiota of sows and their offspring from German commercial pig farms

Development of Swine’s Digestive Tract Microbiota and Its Relation to Production Indices—A Review

(2020) Damian Knecht et al.   Animals

Distinct maternal microbiota clusters are associated with diet during pregnancy: impact on neonatal microbiota and infant growth during the first 18 months of life

(2020) Izaskun García-Mantrana et al.   Gut Microbes

Piglet gut microbial shifts early in life: causes and effects

(2019) Robin B. Guevarra et al.   Journal of Animal Science and Biotechnology

Development and Function of the Intestinal Microbiome and Potential Implications for Pig Production

(2019) Tanya Nowland et al.   Animals

Stages of pregnancy and weaning influence the gut microbiota diversity and function in sows

(2019) Y.J. Ji et al.   JOURNAL OF APPLIED MICROBIOLOGY

Establishing microbial composition measurement standards with reference frames

(2019) James T. Morton et al.   Nature Communications

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Dramatic Remodeling of the Gut Microbiome Around Parturition and Its Relationship With Host Serum Metabolic Changes in Sows

(2019) Xiaochang Huang et al.   Frontiers in Microbiology

Maternal imprinting of the neonatal microbiota colonization in intrauterine growth restricted piglets: a review

(2019) Lili Jiang et al.   Journal of Animal Science and Biotechnology

Interrogating the microbiome: experimental and computational considerations in support of study reproducibility

(2018) Carine Poussin et al.   DRUG DISCOVERY TODAY

In Vivo Assessment of Resistant Starch Degradation by the Caecal Microbiota of Mice Using RNA-Based Stable Isotope Probing—A Proof-of-Principle Study

(2018) Elena Herrmann et al.   Nutrients

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Gut Microbiota Dysbiosis in Postweaning Piglets: Understanding the Keys to Health

(2017) Raphaële Gresse et al.   TRENDS IN MICROBIOLOGY

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine

(2017) Jacoline Gerritsen et al.   PeerJ

Housing Systems Influence Gut Microbiota Composition of Sows but Not of Their Piglets

(2017) Tereza Kubasova et al.   PLoS One

Moderate dietary protein restriction alters the composition of gut microbiota and improves ileal barrier function in adult pig model

(2017) Peixin Fan et al.   Scientific Reports

Age, introduction of solid feed and weaning are more important determinants of gut bacterial succession in piglets than breed and nursing mother as revealed by a reciprocal cross-fostering model

(2016) Gaorui Bian et al.   ENVIRONMENTAL MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Analysis of swine fecal microbiota at various growth stages

(2015) Jungman Kim et al.   ARCHIVES OF MICROBIOLOGY

Characterization of the bacterial gut microbiota of piglets suffering from new neonatal porcine diarrhoea

(2015) Marie Louise Hermann-Bank et al.   BMC Veterinary Research

Early-life establishment of the swine gut microbiome and impact on host phenotypes

(2015) Núria Mach et al.   Environmental Microbiology Reports

Diet shapes the gut microbiome of pigs during nursing and weaning

(2015) Steven A. Frese et al.   Microbiome

Assessment of fecal bacterial diversity among healthy piglets during the weaning transition

(2014) Edward Alain B. Pajarillo et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding

(2013) Ted Jost et al.   ENVIRONMENTAL MICROBIOLOGY

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Mom Knows Best: The Universality of Maternal Microbial Transmission

(2013) Lisa J. Funkhouser et al.   PLOS BIOLOGY

Can Nutritional Modulation of Maternal Intestinal Microbiota Influence the Development of the Infant Gastrointestinal Tract?

(2012) Caroline Thum et al.   JOURNAL OF NUTRITION

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

The immediate environment during postnatal development has long-term impact on gut community structure in pigs

(2008) Claire L Thompson et al.   ISME Journal