4.8 Article

LipidSig: a web-based tool for lipidomic data analysis

Journal

NUCLEIC ACIDS RESEARCH
Volume 49, Issue W1, Pages W336-W345

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/nar/gkab419

Keywords

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Funding

  1. Ministry of Science and Technology [MOST 108-2622-E039-005-CC2, MOST 109-2622-E-039-004-CC2, MOST 109-2314-B-182-078-MY3, MOST 109-2327-B-039-002, MOST 109-2628-B-182-008, MOST 109-2628-E-039-001MY3]
  2. Chang Gung Memorial Hospital at Linkou [CMRPD1J0322, CMRPD1H0473]
  3. Ministry of Science and Technology
  4. China Medical University [CMU107-S-24, CMU 108-Z-02, CMU108-MF-93, CMU109-MF-61]

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LipidSig is a flexible and user-friendly web server designed to help users identify significant lipid-related features and advance the field of lipid biology through efficient data analysis and exploration of lipid characteristics.
With the continuing rise of lipidomic studies, there is an urgent need for a useful and comprehensive tool to facilitate lipidomic data analysis. The most important features making lipids different from general metabolites are their various characteristics, including their lipid classes, double bonds, chain lengths, etc. Based on these characteristics, lipid species can be classified into different categories and, more interestingly, exert specific biological functions in a group. In an effort to simplify lipidomic analysis workflows and enhance the exploration of lipid characteristics, we have developed a highly flexible and user-friendly web server called LipidSig. It consists of five sections, namely, Profiling, Differential Expression, Correlation, Network and Machine Learning, and evaluates lipid effects on cellular or disease phenotypes. One of the specialties of LipidSig is the conversion between lipid species and characteristics according to a user-defined characteristics table. This function allows for efficient data mining for both individual lipids and subgroups of characteristics. To expand the server's practical utility, we also provide analyses focusing on fatty acid properties and multiple characteristics. In summary, LipidSig is expected to help users identify significant lipid-related features and to advance the field of lipid biology.

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