DNA demethylases remodel DNA methylation in rice gametes and zygote and are required for reproduction

Genome-wide redistribution of 24-nt siRNAs in rice gametes

(2020) Chenxin Li et al.   GENOME RESEARCH

Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin

(2020) Michael Borg et al.   NATURE CELL BIOLOGY

Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation

(2020) Filipe Borges et al.   CURRENT BIOLOGY

DNA methylation dynamics of sperm cell lineage development in tomato

(2020) Yunlong Lu et al.   PLANT JOURNAL

Two-Step Maternal-to-Zygotic Transition with Two-Phase Parental Genome Contributions

(2019) Peng Zhao et al.   DEVELOPMENTAL CELL

Epigenetic dynamics during flowering plant reproduction: evidence for reprogramming?

(2019) Mary Gehring   NEW PHYTOLOGIST

DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm

(2019) M. Yvonne Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resetting histone modifications during human parental-to-zygotic transition

(2019) Weikun Xia et al.   SCIENCE

The catalytic core of DEMETER guides active DNA demethylation in Arabidopsis

(2019) Changqing Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin

(2018) Feng Tan et al.   PLANT PHYSIOLOGY

FACT complex is required for DNA demethylation at heterochromatin during reproduction inArabidopsis

(2018) Jennifer M. Frost et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutations in the DNA demethylase OsROS1 result in a thickened aleurone and improved nutritional value in rice grains

(2018) Jinxin Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A DNA methylation reader complex that enhances gene transcription

(2018) C. Jake Harris et al.   SCIENCE

Live-cell analysis of DNA methylation during sexual reproduction inArabidopsisreveals context and sex-specific dynamics controlled by noncanonical RdDM

(2017) Mathieu Ingouff et al.   GENES & DEVELOPMENT

Self-cleaving ribozymes enable the production of guide RNAs from unlimited choices of promoters for CRISPR/Cas9 mediated genome editing

(2017) Yubing He et al.   Journal of Genetics and Genomics

Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis

(2017) James Walker et al.   NATURE GENETICS

Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)

(2017) Stephen J Clark et al.   Nature Protocols

Control of DEMETER DNA demethylase gene transcription in male and female gamete companion cells inArabidopsis thaliana

(2017) Jin-Sup Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Similarity between soybean andArabidopsisseed methylomes and loss of non-CG methylation does not affect seed development

(2017) Jer-Young Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways

(2016) Feng Tan et al.   PLANT PHYSIOLOGY

DNA demethylation is initiated in the central cells ofArabidopsisand rice

(2016) Kyunghyuk Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsismale sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues

(2016) Ping-Hung Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DSDecode: A Web-Based Tool for Decoding of Sequencing Chromatograms for Genotyping of Targeted Mutations

(2015) Weizhi Liu et al.   Molecular Plant

Chromatin remodelling during male gametophyte development

(2015) Michael Borg et al.   PLANT JOURNAL

Epigenetic reprogramming in plant sexual reproduction

(2014) Tomokazu Kawashima et al.   NATURE REVIEWS GENETICS

DNA methylation as a system of plant genomic immunity

(2014) M. Yvonne Kim et al.   TRENDS IN PLANT SCIENCE

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data

(2013) Weilong Guo et al.   BMC GENOMICS

Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster

(2013) José J de Vega-Bartol et al.   BMC PLANT BIOLOGY

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Parental contributions to the transcriptome of early plant embryos

(2013) Célia Baroux et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants

(2013) Wenjing She et al.   DEVELOPMENT

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Transcriptomes of isolatedOryza sativagametes characterized by deep sequencing: evidence for distinct sex-dependent chromatin and epigenetic states before fertilization

(2013) Sarah N. Anderson et al.   PLANT JOURNAL

Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm

(2013) J. A. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA

(2012) Joseph P. Calarco et al.   CELL

A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny

(2012) Akemi Ono et al.   PLANT JOURNAL

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

(2012) C. A. Ibarra et al.   SCIENCE

Transgenerational epigenetic inheritance in plants

(2011) Marie-Theres Hauser et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Maternal Epigenetic Pathways Control Parental Contributions to Arabidopsis Early Embryogenesis

(2011) Daphné Autran et al.   CELL

Regulation and function of DNA methylation in plants and animals

(2011) Xin-Jian He et al.   CELL RESEARCH

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte

(2011) V. K. Schoft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice

(2011) H. La et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

(2011) R. J. Schmitz et al.   SCIENCE

Zygotic Resetting of the HISTONE 3 Variant Repertoire Participates in Epigenetic Reprogramming in Arabidopsis

(2010) Mathieu Ingouff et al.   CURRENT BIOLOGY

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Local DNA hypomethylation activates genes in rice endosperm

(2010) A. Zemach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

Active DNA Demethylation Mediated by DNA Glycosylases

(2009) Jian-Kang Zhu   Annual Review of Genetics

Genome-Wide Demethylation of Arabidopsis Endosperm

(2009) T.-F. Hsieh et al.   SCIENCE