Evolutionary history of Hemerocallis in Japan inferred from chloroplast and nuclear phylogenies and levels of interspecific gene flow

The complete chloroplast genome of Hemerocallis citrina (Asphodelaceae), an ornamental and medicinal plant

(2020) Xiaobin Ou et al.   Mitochondrial DNA Part B-Resources

Rapid Divergence Followed by Adaptation to Contrasting Ecological Niches of Two Closely Related Columbine Species Aquilegia japonica and A. oxysepala

(2019) Ming-Rui Li et al.   Genome Biology and Evolution

Adaptive introgression: a plant perspective

(2018) Adriana Suarez-Gonzalez et al.   Biology Letters

UV bullseye contrast of Hemerocallis flowers attracts hawkmoths but not swallowtail butterflies

(2018) Shun K. Hirota et al.   Ecology and Evolution

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sedum danjoense (Crassulaceae), a new species of succulent plants from the Danjo Islands in Japan

(2017) TAKURO ITO et al.   Phytotaxa

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

A new family placement for Australian blue squill, Chamaescilla: Xanthorrhoeaceae (Hemerocallidoideae), not Asparagaceae

(2016) TODD G.B. McLAY et al.   Phytotaxa

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

An R2R3-MYB transcription factor regulates carotenoid pigmentation inMimulus lewisiiflowers

(2015) Janelle M. Sagawa et al.   NEW PHYTOLOGIST

MIG-seq: an effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform

(2015) Yoshihisa Suyama et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

(2014) Wesley A. Larson et al.   Evolutionary Applications

Phenotypic and genetic evidence for ecological speciation ofAquilegia japonicaandA. oxysepala

(2014) Lin-Feng Li et al.   NEW PHYTOLOGIST

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Spatiotemporal reconstruction of theAquilegiarapid radiation through next-generation sequencing of rapidly evolving cpDNA regions

(2013) Simone Fior et al.   NEW PHYTOLOGIST

Pollinator-Mediated Selection on Flower Color, Flower Scent and Flower Morphology of Hemerocallis: Evidence from Genotyping Individual Pollen Grains On the Stigma

(2013) Shun K. Hirota et al.   PLoS One

Pollinator-mediated evolution of floral signals

(2013) Florian P. Schiestl et al.   TRENDS IN ECOLOGY & EVOLUTION

A new day dawning: Hemerocallis (daylily) as a future model organism

(2013) M. J. Rodriguez-Enriquez et al.   AoB Plants

Uninformative polymorphisms bias genome scans for signatures of selection

(2012) Marius Roesti et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae)

(2012) Chi-Chun Huang et al.   GENE

Difference in flowering time as an isolating barrier

(2012) Tomotaka Matsumoto et al.   JOURNAL OF THEORETICAL BIOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Relative Role of Flower Color and Scent on Pollinator Attraction: Experimental Tests using F1 and F2 Hybrids of Daylily and Nightlily

(2012) Shun K. Hirota et al.   PLoS One

Parallel evolution of angiosperm colour signals: common evolutionary pressures linked to hymenopteran vision

(2012) A. G. Dyer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic evidence for pollinator-driven diversification of angiosperms

(2012) Timotheüs van der Niet et al.   TRENDS IN ECOLOGY & EVOLUTION

Bio-ecological, phytosociological and conservation aspects of relictual and disjointed populations ofSimethis mattiazzi(Vandelli) Sacc. (Xanthorrhoeaceae) in the Channel of Sicily

(2012) Lorenzo Gianguzzi et al.   ACTA BOTANICA GALLICA

Induced mutations affecting pollinator choice in Mimulus lewisii (Phrymaceae)

(2011) Christina R. Owen et al.   Arthropod-Plant Interactions

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Pollinator Choice in Petunia Depends on Two Major Genetic Loci for Floral Scent Production

(2011) Ulrich Klahre et al.   CURRENT BIOLOGY

Gene Duplication in Mimulus Underlies Parallel Floral Evolution via Independent trans-Regulatory Changes

(2011) Arielle M. Cooley et al.   CURRENT BIOLOGY

Centres of plant endemism in China: places for survival or for speciation?

(2011) Jordi López-Pujol et al.   JOURNAL OF BIOGEOGRAPHY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Variation of flower opening and closing times in F1 and F2 hybrids of daylily (Hemerocallis fulva ; Hemerocallidaceae) and nightlily (H. citrina )

(2010) Kozue Nitta et al.   AMERICAN JOURNAL OF BOTANY

Genetic Variation at Nuclear Loci Fails to Distinguish Two Morphologically Distinct Species of Aquilegia

(2010) Elizabeth A. Cooper et al.   PLoS One

TagDust--a program to eliminate artifacts from next generation sequencing data

(2009) T. Lassmann et al.   BIOINFORMATICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

How Robust Are "Isolation with Migration" Analyses to Violations of the IM Model? A Simulation Study

(2009) J. L. Strasburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Genetic changes contributing to the parallel evolution of red floral pigmentation amongIpomoeaspecies

(2009) Matthew A. Streisfeld et al.   NEW PHYTOLOGIST

Adaptive radiations: From field to genomic studies

(2009) S. A. Hodges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MOLECULAR DEMOGRAPHIC HISTORY OF THE ANNUAL SUNFLOWERSHELIANTHUS ANNUUSANDH. PETIOLARIS-LARGE EFFECTIVE POPULATION SIZES AND RATES OF LONG-TERM GENE FLOW

(2008) Jared L. Strasburg et al.   EVOLUTION

Reproductive isolation on interspecific backcross of F1 pollen to parental species, Hemerocallis fulva and H. citrina (Hemerocallidaceae)

(2008) Akiko A. Yasumoto et al.   JOURNAL OF PLANT RESEARCH