Peatland microbial community responses to plant functional group and drought are depth‐dependent

Recovery of fen peatland microbiomes and predicted functional profiles after rewetting

(2020) Willem-Jan Emsens et al.   ISME Journal

Biotic and Environmental Drivers of Plant Microbiomes Across a Permafrost Thaw Gradient

(2020) Moira Hough et al.   Frontiers in Microbiology

Peatland warming strongly increases fine-root growth

(2020) Avni Malhotra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural and functional differentiation of the microbial community in the surface and subsurface peat of two minerotrophic fens in China

(2019) Meng Wang et al.   PLANT AND SOIL

Vertical stratification of peatland microbial communities follows a gradient of functional types across hummock–hollow microtopographies

(2019) Asma Asemaninejad et al.   ECOSCIENCE

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Plant functional group effects on peat carbon cycling in a boreal rich fen

(2019) Danielle Rupp et al.   BIOGEOCHEMISTRY

Molecular identification and antibacterial properties of an ericoid associated mycorrhizal fungus

(2019) O. R. Adeoyo et al.   BMC MICROBIOLOGY

Reduction‐Oxidation Potential and Dissolved Organic Matter Composition in Northern Peat Soil: Interactive Controls of Water Table Position and Plant Functional Groups

(2019) E. S. Kane et al.   Journal of Geophysical Research-Biogeosciences

Ecological responses to forest age, habitat, and host vary by mycorrhizal type in boreal peatlands

(2018) Peter G. Kennedy et al.   MYCORRHIZA

Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists

(2018) Elena Martino et al.   NEW PHYTOLOGIST

Biochemical determinants of litter quality in 15 species of Sphagnum

(2018) Fia Bengtsson et al.   PLANT AND SOIL

Climate change favours specific fungal communities in boreal peatlands

(2018) Asma Asemaninejad et al.   SOIL BIOLOGY & BIOCHEMISTRY

Wetlands In a Changing Climate: Science, Policy and Management

(2018) William R. Moomaw et al.   WETLANDS

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Vertical Stratification of Peat Pore Water Dissolved Organic Matter Composition in a Peat Bog in Northern Minnesota

(2018) Malak M. Tfaily et al.   Journal of Geophysical Research-Biogeosciences

Vertical distribution of fungi in hollows and hummocks of boreal peatlands

(2017) Asma Asemaninejad et al.   Fungal Ecology

Tipping point in plant-fungal interactions under severe drought causes abrupt rise in peatland ecosystem respiration

(2017) Vincent E. J. Jassey et al.   GLOBAL CHANGE BIOLOGY

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

Emerging role of wetland methane emissions in driving 21st century climate change

(2017) Zhen Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

(2017) Tobias Guldberg Frøslev et al.   Nature Communications

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

Multi-decadal Changes in Water Table Levels Alter Peatland Carbon Cycling

(2016) Rodney A. Chimner et al.   ECOSYSTEMS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

The Sphagnum microbiome: new insights from an ancient plant lineage

(2016) Joel E. Kostka et al.   NEW PHYTOLOGIST

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Effects of long-term drainage on microbial community composition vary between peatland types

(2016) Zuzana Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Vegetation exerts a greater control on litter decomposition than climate warming in peatlands

(2015) Susan E. Ward et al.   ECOLOGY

Peatland vascular plant functional types affect methane dynamics by altering microbial community structure

(2015) Bjorn J. M. Robroek et al.   JOURNAL OF ECOLOGY

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

(2015) R. Henrik Nilsson et al.   MICROBES AND ENVIRONMENTS

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Enhanced carbon release under future climate conditions in a peatland mesocosm experiment: the role of phenolic compounds

(2015) Catherine M. Dieleman et al.   PLANT AND SOIL

piecewiseSEM: Piecewise structural equation modelling inr for ecology, evolution, and systematics

(2015) Jonathan S. Lefcheck   Methods in Ecology and Evolution

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Microbial Community Stratification Linked to Utilization of Carbohydrates and Phosphorus Limitation in a Boreal Peatland at Marcell Experimental Forest, Minnesota, USA

(2014) Xueju Lin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of water table position and plant functional group on plant community, aboveground production, and peat properties in a peatland mesocosm experiment (PEATcosm)

(2014) Lynette R. Potvin et al.   PLANT AND SOIL

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

(2014) Robert Riley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Microbiology of wetlands

(2013) Paul L. E. Bodelier et al.   Frontiers in Microbiology

Current state of knowledge regarding the world’s wetlands and their future under global climate change: a synthesis

(2012) Wolfgang J. Junk et al.   AQUATIC SCIENCES

Mapping the niche space of soil microorganisms using taxonomy and traits

(2012) Jay T. Lennon et al.   ECOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Actinobacteria community structure in the peat profile of boreal bogs follows a variation in the microtopographical gradient similar to vegetation

(2012) Mirkka Kotiaho et al.   PLANT AND SOIL

Microbial communities in natural and disturbed peatlands: A review

(2012) R. Andersen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biogeochemical plant–soil microbe feedback in response to climate warming in peatlands

(2012) Luca Bragazza et al.   Nature Climate Change

Microbial Transformations of Nitrogen, Sulfur, and Iron Dictate Vegetation Composition in Wetlands: A Review

(2012) Leon P. M. Lamers et al.   Frontiers in Microbiology

Organic nutrient uptake by mycorrhizal fungi enhances ecosystem carbon storage: a model-based assessment

(2011) Kate H. Orwin et al.   ECOLOGY LETTERS

Drying–Rewetting Cycles Affect Fungal and Bacterial Growth Differently in an Arable Soil

(2010) Azadeh Bapiri et al.   MICROBIAL ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Reduced genomic potential for secreted plant cell-wall-degrading enzymes in the ectomycorrhizal fungus Amanita bisporigera, based on the secretome of Trichoderma reesei

(2009) Subashini Nagendran et al.   FUNGAL GENETICS AND BIOLOGY

Decreased summer water table depth affects peatland vegetation

(2008) Angela Breeuwer et al.   BASIC AND APPLIED ECOLOGY

RAPID CARBON RESPONSE OF PEATLANDS TO CLIMATE CHANGE

(2008) Scott D. Bridgham et al.   ECOLOGY

Plant species traits are the predominant control on litter decomposition rates within biomes worldwide

(2008) William K. Cornwell et al.   ECOLOGY LETTERS

Radiocarbon evidence for the importance of surface vegetation on fermentation and methanogenesis in contrasting types of boreal peatlands

(2008) J. P. Chanton et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Microbial contributions to climate change through carbon cycle feedbacks

(2008) Richard D Bardgett et al.   ISME Journal

Species-specific effects of plants colonising cutover peatlands on patterns of carbon source utilisation by soil microorganisms

(2007) Weigang Yan et al.   SOIL BIOLOGY & BIOCHEMISTRY