4.7 Review

Recent progress in the application of omics technologies in the study of bio-mining microorganisms from extreme environments

Journal

MICROBIAL CELL FACTORIES
Volume 20, Issue 1, Pages -

Publisher

BMC
DOI: 10.1186/s12934-021-01671-7

Keywords

Bio-mining microorganisms; Omics technologies; Genomics; Metagenomics; Transcriptomics; Metatranscriptomics; Proteomics; Metaproteomics; Metabolomics

Funding

  1. National Key R&D Program of China [2018YFA0902200]
  2. Frontier Science Center of the Ministry of Education (Tianjin University)

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Omics technologies play a crucial role in studying bio-mining microorganisms and their communities in extreme environments, providing insights into microbial adaptive mechanisms. Different omics technologies have unique advantages in exploring microbial diversity, adaptive evolution, and other aspects.
Bio-mining microorganisms are a key factor affecting the metal recovery rate of bio-leaching, which inevitably produces an extremely acidic environment. As a powerful tool for exploring the adaptive mechanisms of microorganisms in extreme environments, omics technologies can greatly aid our understanding of bio-mining microorganisms and their communities on the gene, mRNA, and protein levels. These omics technologies have their own advantages in exploring microbial diversity, adaptive evolution, changes in metabolic characteristics, and resistance mechanisms of single strains or their communities to extreme environments. These technologies can also be used to discover potential new genes, enzymes, metabolites, metabolic pathways, and species. In addition, integrated multi-omics analysis can link information at different biomolecular levels, thereby obtaining more accurate and complete global adaptation mechanisms of bio-mining microorganisms. This review introduces the current status and future trends in the application of omics technologies in the study of bio-mining microorganisms and their communities in extreme environments.

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