ALKBH3 partner ASCC3 mediates P-body formation and selective clearance of MMS-induced 1-methyladenosine and 3-methylcytosine from mRNA

circNDUFB2 inhibits non-small cell lung cancer progression via destabilizing IGF2BPs and activating anti-tumor immunity

(2021) Botai Li et al.   Nature Communications

The G3BP1-Family-USP10 Deubiquitinase Complex Rescues Ubiquitinated 40S Subunits of Ribosomes Stalled in Translation from Lysosomal Degradation

(2020) Cindy Meyer et al.   MOLECULAR CELL

Identification of a novel trigger complex that facilitates ribosome-associated quality control in mammalian cells

(2020) Satoshi Hashimoto et al.   Scientific Reports

A molecular-level perspective on the frequency, distribution, and consequences of messenger RNA modifications

(2020) Joshua D. Jones et al.   Wiley Interdisciplinary Reviews-RNA

TRIM25 and its emerging RNA‐binding roles in antiviral defense

(2020) Nila Roy Choudhury et al.   Wiley Interdisciplinary Reviews-RNA

OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature

(2020) Yongyan Tang et al.   DEVELOPMENTAL CELL

Disruption of the RNA modifications that target the ribosome translation machinery in human cancer

(2020) Maxime Janin et al.   Molecular Cancer

Intact ribosomes drive the formation of protein quinary structure

(2020) Leonard Breindel et al.   PLoS One

A Census and Categorization Method of Epitranscriptomic Marks

(2020) Julia Mathlin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Emerging Roles of Gemin5: From snRNPs Assembly to Translation Control

(2020) Encarnacion Martinez-Salas et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The ASC-1 Complex Disassembles Collided Ribosomes

(2020) Szymon Juszkiewicz et al.   MOLECULAR CELL

GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control

(2020) Kelsey L. Hickey et al.   MOLECULAR CELL

Epigenetic and epitranscriptomic regulation of viral replication

(2020) Kevin Tsai et al.   NATURE REVIEWS MICROBIOLOGY

Ribosome collisions trigger cis-acting feedback inhibition of translation initiation

(2020) Szymon Juszkiewicz et al.   eLife

m5UPred: a web server for the prediction of RNA 5-methyluridine (m5U) sites from sequences

(2020) Jie Jiang et al.   Molecular Therapy-Nucleic Acids

Flipping the script: viral capitalization of RNA modifications

(2020) Matthew T Sacco et al.   Briefings in Functional Genomics

Pseudouridine-mediated translation control of mRNA by methionine aminoacyl tRNA synthetase

(2020) Ofri Levi et al.   NUCLEIC ACIDS RESEARCH

Collided ribosomes form a unique structural interface to induce Hel2‐driven quality control pathways

(2019) Ken Ikeuchi et al.   EMBO JOURNAL

Simultaneous quantitation of 14 DNA alkylation adducts in human liver and kidney cells by UHPLC-MS/MS: Application to profiling DNA adducts of genotoxic reagents

(2019) Yu Tang et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

Transcriptome-wide Mapping of Internal N7-Methylguanosine Methylome in Mammalian mRNA

(2019) Li-Sheng Zhang et al.   MOLECULAR CELL

Metadherin: A Therapeutic Target in Multiple Cancers

(2019) Gourav Dhiman et al.   Frontiers in Oncology

Lysine/RNA-interactions drive and regulate biomolecular condensation

(2019) Tina Ukmar-Godec et al.   Nature Communications

Cytosine-5 RNA methylation links protein synthesis to cell metabolism

(2019) Nikoletta A. Gkatza et al.   PLOS BIOLOGY

Dynamic methylome of internal mRNA N7-methylguanosine and its regulatory role in translation

(2019) Lionel Malbec et al.   CELL RESEARCH

Migration of Small Ribosomal Subunits on the 5′ Untranslated Regions of Capped Messenger RNA

(2019) Nikolay E. Shirokikh et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Evolution of a reverse transcriptase to map N1-methyladenosine in human messenger RNA

(2019) Huiqing Zhou et al.   NATURE METHODS

How do cells cope with RNA damage and its consequences?

(2019) Liewei L. Yan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Tudor SND1 protein is an m6A RNA reader essential for replication of Kaposi’s sarcoma-associated herpesvirus

(2019) Belinda Baquero-Perez et al.   eLife

YTHDF2 Recognition of N1-Methyladenosine (m1A)-Modified RNA Is Associated with Transcript Destabilization

(2019) Kyung W. Seo et al.   ACS Chemical Biology

Oxidation and alkylation stresses activate ribosome-quality control

(2019) Liewei L. Yan et al.   Nature Communications

Existence of Internal N7-Methylguanosine Modification in mRNA Determined by Differential Enzyme Treatment Coupled with Mass Spectrometry Analysis

(2018) Jie-Mei Chu et al.   ACS Chemical Biology

Identification of YTH Domain-Containing Proteins as the Readers for N1-Methyladenosine in RNA

(2018) Xiaoxia Dai et al.   ANALYTICAL CHEMISTRY

High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies

(2018) Ji-Young Youn et al.   MOLECULAR CELL

Tet2 promotes pathogen infection-induced myelopoiesis through mRNA oxidation

(2018) Qicong Shen et al.   NATURE

Recognition of RNA N6-methyladenosine by IGF2BP proteins enhances mRNA stability and translation

(2018) Huilin Huang et al.   NATURE CELL BIOLOGY

The m6A reader protein YTHDC2 interacts with the small ribosomal subunit and the 5′-3′ exoribonuclease XRN1

(2018) Jens Kretschmer et al.   RNA

The mRNA-binding protein Serbp1 as an auxiliary protein associated with mammalian cytoplasmic ribosomes

(2018) Akiko Muto et al.   CELL BIOCHEMISTRY AND FUNCTION

Landscape of the complete RNA chemical modifications in the human 80S ribosome

(2018) Masato Taoka et al.   NUCLEIC ACIDS RESEARCH

Acetylation of Cytidine in mRNA Promotes Translation Efficiency

(2018) Daniel Arango et al.   CELL

Transfer RNA demethylase ALKBH3 promotes cancer progression via induction of tRNA-derived small RNAs

(2018) Zhuojia Chen et al.   NUCLEIC ACIDS RESEARCH

Three distinct 3-methylcytidine (m 3 C) methyltransferases modify tRNA and mRNA in mice and humans

(2017) Luang Xu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Initiation of Quality Control during Poly(A) Translation Requires Site-Specific Ribosome Ubiquitination

(2017) Szymon Juszkiewicz et al.   MOLECULAR CELL

P-Body Purification Reveals the Condensation of Repressed mRNA Regulons

(2017) Arnaud Hubstenberger et al.   MOLECULAR CELL

Base-Resolution Mapping Reveals Distinct m 1 A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts

(2017) Xiaoyu Li et al.   MOLECULAR CELL

Regulation of m 6 A Transcripts by the 3ʹ→5ʹ RNA Helicase YTHDC2 Is Essential for a Successful Meiotic Program in the Mammalian Germline

(2017) Magdalena Natalia Wojtas et al.   MOLECULAR CELL

A ubiquitin-dependent signalling axis specific for ALKBH-mediated DNA dealkylation repair

(2017) Joshua R. Brickner et al.   NATURE

Nm-seq maps 2′-O-methylation sites in human mRNA with base precision

(2017) Qing Dai et al.   NATURE METHODS

Asc1, Hel2, and Slh1 couple translation arrest to nascent chain degradation

(2017) Cole S. Sitron et al.   RNA

ALKBH1-Mediated tRNA Demethylation Regulates Translation

(2016) Fange Liu et al.   CELL

Nuclear m 6 A Reader YTHDC1 Regulates mRNA Splicing

(2016) Wen Xiao et al.   MOLECULAR CELL

Stem cell function and stress response are controlled by protein synthesis

(2016) Sandra Blanco et al.   NATURE

The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA

(2016) Dan Dominissini et al.   NATURE

Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome

(2016) Xiaoyu Li et al.   Nature Chemical Biology

YTHDF2 destabilizes m6A-containing RNA through direct recruitment of the CCR4–NOT deadenylase complex

(2016) Hao Du et al.   Nature Communications

N6-methyladenosine Modulates Messenger RNA Translation Efficiency

(2015) Xiao Wang et al.   CELL

An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies

(2015) Mohit Chawla et al.   NUCLEIC ACIDS RESEARCH

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

O6-Methylguanosine leads to position-dependent effects on ribosome speed and fidelity

(2015) Benjamin H. Hudson et al.   RNA

Label-Free Protein-RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression

(2015) Jorge Boucas et al.   PLoS One

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

(2014) Schraga Schwartz et al.   CELL

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

N6-methyladenosine-dependent regulation of messenger RNA stability

(2013) Xiao Wang et al.   NATURE

System-wide identification of RNA-binding proteins by interactome capture

(2013) Alfredo Castello et al.   Nature Protocols

FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA

(2013) Ye Fu et al.   Nature Communications

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

(2012) Juergen Cox et al.   BMC BIOINFORMATICS

Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons

(2012) Kate D. Meyer et al.   CELL

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

(2012) Alfredo Castello et al.   CELL

Translational repression precedes and is required for ZAP-mediated mRNA decay

(2012) Yiping Zhu et al.   EMBO JOURNAL

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

(2012) Alexander G. Baltz et al.   MOLECULAR CELL

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

(2012) Dan Dominissini et al.   NATURE

DNA Unwinding by ASCC3 Helicase Is Coupled to ALKBH3-Dependent DNA Alkylation Repair and Cancer Cell Proliferation

(2011) Sebastian Dango et al.   MOLECULAR CELL

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO

(2011) Guifang Jia et al.   Nature Chemical Biology

Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin

(2010) Tilman Schneider-Poetsch et al.   Nature Chemical Biology

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Identification of a novel, widespread, and functionally important PCNA-binding motif

(2009) Karin M. Gilljam et al.   JOURNAL OF CELL BIOLOGY

Analysis of Dom34 and Its Function in No-Go Decay

(2009) Dario O. Passos et al.   MOLECULAR BIOLOGY OF THE CELL

Quantitative proteomic analysis of single pancreatic islets

(2009) Leonie F. Waanders et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Formation of stress granules inhibits apoptosis by suppressing stress-responsive MAPK pathways

(2008) Kyoko Arimoto et al.   NATURE CELL BIOLOGY