Classification, inference and segmentation of anomalous diffusion with recurrent neural networks

Anomalous nanoparticle surface diffusion in LCTEM is revealed by deep learning-assisted analysis

(2021) Vida Jamali et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spurious ergodicity breaking in normal and fractional Ornstein-Uhlenbeckprocess

(2020) Yousof Mardoukhi et al.   NEW JOURNAL OF PHYSICS

Deciphering anomalous heterogeneous intracellular transport with neural networks

(2020) Daniel Han et al.   eLife

Impact of Feature Choice on Machine Learning Classification of Fractional Anomalous Diffusion

(2020) Hanna Loch-Olszewska et al.   Entropy

Moses, Noah and Joseph Effects in Coupled L\'evy Processes

(2020) Erez Aghion et al.   NEW JOURNAL OF PHYSICS

Enhanced force-field calibration via machine learning

(2020) Aykut Argun et al.   Applied Physics Reviews

Spectral Content of a Single Non-Brownian Trajectory

(2019) Diego Krapf et al.   Physical Review X

Single-Particle Diffusion Characterization by Deep Learning

(2019) Naor Granik et al.   BIOPHYSICAL JOURNAL

Single trajectory characterization via machine learning

(2019) Gorka Muñoz-Gil et al.   NEW JOURNAL OF PHYSICS

Optimization Methods for Large-Scale Machine Learning

(2018) Léon Bottou et al.   SIAM REVIEW

Bayesian analysis of single-particle tracking data using the nested-sampling algorithm: maximum-likelihood model selection applied to stochastic-diffusivity data

(2018) Samudrajit Thapa et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Single-Molecule Kinetics in Living Cells

(2018) Johan Elf et al.   Annual Review of Biochemistry

Anomalous diffusion and the Moses effect in an aging deterministic model

(2018) Philipp G Meyer et al.   NEW JOURNAL OF PHYSICS

Machine learning: New tool in the box

(2017) Lenka Zdeborová   Nature Physics

Classification and Segmentation of Nanoparticle Diffusion Trajectories in Cellular Micro Environments

(2017) Thorsten Wagner et al.   PLoS One

Ergodicity breaking on the neuronal surface emerges from random switching between diffusive states

(2017) Aleksander Weron et al.   Scientific Reports

Single-Molecule Imaging of Na v 1.6 on the Surface of Hippocampal Neurons Reveals Somatic Nanoclusters

(2016) Elizabeth J. Akin et al.   BIOPHYSICAL JOURNAL

Communication: A multiscale Bayesian inference approach to analyzing subdiffusion in particle trajectories

(2016) Konrad Hinsen et al.   JOURNAL OF CHEMICAL PHYSICS

A toolbox for determining subdiffusive mechanisms

(2015) Yasmine Meroz et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Guidelines for the Fitting of Anomalous Diffusion Mean Square Displacement Graphs from Single Particle Tracking Experiments

(2015) Eldad Kepten et al.   PLoS One

Estimating the anomalous diffusion exponent for single particle tracking data with measurement errors - An alternative approach

(2015) Krzysztof Burnecki et al.   Scientific Reports

Anomalous diffusion models and their properties: non-stationarity, non-ergodicity, and ageing at the centenary of single particle tracking

(2014) Ralf Metzler et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Nonergodic Subdiffusion from Brownian Motion in an Inhomogeneous Medium

(2014) P. Massignan et al.   PHYSICAL REVIEW LETTERS

Anomalous Diffusion of Single Particles in Cytoplasm

(2013) Benjamin M. Regner et al.   BIOPHYSICAL JOURNAL

Anomalous diffusion and power-law relaxation of the time averaged mean squared displacement in worm-like micellar solutions

(2013) Jae-Hyung Jeon et al.   NEW JOURNAL OF PHYSICS

Improved estimation of anomalous diffusion exponents in single-particle tracking experiments

(2013) Eldad Kepten et al.   PHYSICAL REVIEW E

Anomalous transport in the crowded world of biological cells

(2013) Felix Höfling et al.   REPORTS ON PROGRESS IN PHYSICS

Universal Algorithm for Identification of Fractional Brownian Motion. A Case of Telomere Subdiffusion

(2012) Krzysztof Burnecki et al.   BIOPHYSICAL JOURNAL

Publisher’s Note: Inequivalence of time and ensemble averages in ergodic systems: Exponential versus power-law relaxation in confinement [Phys. Rev. E85, 021147 (2012)]

(2012) Jae-Hyung Jeon et al.   PHYSICAL REVIEW E

Strange kinetics of single molecules in living cells

(2012) Eli Barkai et al.   PHYSICS TODAY

Bayesian estimation of self-similarity exponent

(2011) Natallia Makarava et al.   PHYSICAL REVIEW E

Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method

(2010) Vincent Tejedor et al.   BIOPHYSICAL JOURNAL

Analysis of short subdiffusive time series: scatter of the time-averaged mean-squared displacement

(2010) Jae-Hyung Jeon et al.   Journal of Physics A-Mathematical and Theoretical

Bacterial Chromosomal Loci Move Subdiffusively through a Viscoelastic Cytoplasm

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW LETTERS

Ergodic properties of fractional Brownian-Langevin motion

(2009) Weihua Deng et al.   PHYSICAL REVIEW E

Fractional Brownian Motion Versus the Continuous-Time Random Walk: A Simple Test for Subdiffusive Dynamics

(2009) Marcin Magdziarz et al.   PHYSICAL REVIEW LETTERS

Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells

(2009) I. Bronstein et al.   PHYSICAL REVIEW LETTERS