Root-associated (rhizosphere and endosphere) microbiomes of the Miscanthus sinensis and their response to the heavy metal contamination

Bacterial response to sharp geochemical gradients caused by acid mine drainage intrusion in a terrace: Relevance of C, N, and S cycling and metal resistance

(2020) Weimin Sun et al.   ENVIRONMENT INTERNATIONAL

Comparative characterization of microbial communities that inhabit arsenic-rich and antimony-rich contaminated sites: Responses to two different contamination conditions

(2020) Xiaoxu Sun et al.   ENVIRONMENTAL POLLUTION

Chemolithoautotropic Diazotrophy Dominates the Nitrogen Fixation Process in Mine Tailings

(2020) Xiaoxu Sun et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Characterization of nitrate-dependent As(III)-oxidizing communities in arsenic-contaminated soil and investigation of their metabolic potentials by the combination of DNA-SIP and metagenomics

(2020) Miaomiao Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Uncovering microbial responses to sharp geochemical gradients in a terrace contaminated by acid mine drainage

(2020) Rui Xu et al.   ENVIRONMENTAL POLLUTION

Investigation of the ecological roles of putative keystone taxa during tailing revegetation

(2020) Xiaoxu Sun et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Soil bacterial community structure and functional responses across a long-term mineral phosphorus (Pi) fertilisation gradient differ in grazed and cut grasslands

(2019) Kate Randall et al.   APPLIED SOIL ECOLOGY

Acidobacteria Subgroups and Their Metabolic Potential for Carbon Degradation in Sugarcane Soil Amended With Vinasse and Nitrogen Fertilizers

(2019) Miriam Gonçalves de Chaves et al.   Frontiers in Microbiology

Variation in rhizosphere microbiota correlates with edaphic factor in an abandoned antimony tailing dump

(2019) Enzong Xiao et al.   ENVIRONMENTAL POLLUTION

Phytoremediation potential of Miscanthus sinensis for mercury-polluted sites and its impacts on soil microbial community

(2019) Anqi Zhao et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Bacterial mediated alleviation of heavy metal stress and decreased accumulation of metals in plant tissues: Mechanisms and future prospects

(2018) Hassan Etesami   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

(2018) Lingfei Hu et al.   Nature Communications

Conservation and transmission of seed bacterial endophytes across generations following crossbreeding and repeated inbreeding of rice at different geographic locations

(2018) Denver I. Walitang et al.   MicrobiologyOpen

The Abc of Phosphonate Breakdown: A Mechanism for Bacterial Survival

(2018) M. Cemre Manav et al.   BIOESSAYS

Bacterial Survival Strategies in an Alkaline Tailing Site and the Physiological Mechanisms of Dominant Phylotypes As Revealed by Metagenomic Analyses

(2018) Weimin Sun et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Do Endophytes Promote Growth of Host Plants Under Stress? A Meta-Analysis on Plant Stress Mitigation by Endophytes

(2017) Hyungmin Rho et al.   MICROBIAL ECOLOGY

Sphingomonads in Microbe-Assisted Phytoremediation: Tackling Soil Pollution

(2017) Michael Gatheru Waigi et al.   TRENDS IN BIOTECHNOLOGY

Beneficial role of bacterial endophytes in heavy metal phytoremediation

(2016) Ying Ma et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Are Symbiotic Methanotrophs Key Microbes for N Acquisition in Paddy Rice Root?

(2016) Kiwamu Minamisawa et al.   MICROBES AND ENVIRONMENTS

Biochar-stimulated plant performance is strongly linked to microbial diversity and metabolic potential in the rhizosphere

(2016) Max Kolton et al.   NEW PHYTOLOGIST

Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies

(2016) Bram Beckers et al.   Frontiers in Microbiology

The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application

(2015) Yun Kit Yeoh et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative proteomic analysis in Miscanthus sinensis exposed to antimony stress

(2015) Liang Xue et al.   ENVIRONMENTAL POLLUTION

The hyperaccumulator Sedum plumbizincicola harbors metal-resistant endophytic bacteria that improve its phytoextraction capacity in multi-metal contaminated soil

(2015) Ying Ma et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Potential use of Pseudomonas koreensis AGB-1 in association with Miscanthus sinensis to remediate heavy metal(loid)-contaminated mining site soil

(2015) A. Giridhar Babu et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nodulation by Sinorhizobium meliloti originated from a mining soil alleviates Cd toxicity and increases Cd-phytoextraction in Medicago sativa L.

(2015) Tahar Ghnaya et al.   Frontiers in Plant Science

Influence of amendments and aided phytostabilization on metal availability and mobility in Pb/Zn mine tailings

(2014) Sang-Hwan Lee et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Improvement of nitrogen accumulation and metabolism in rice (Oryza sativa L.) by the endophyte Phomopsis liquidambari

(2014) Bo Yang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Multiple Exposure and Effects Assessment of Heavy Metals in the Population near Mining Area in South China

(2014) Ping Zhuang et al.   PLoS One

Aided phytostabilization using Miscanthus sinensis×giganteus on heavy metal-contaminated soils

(2014) Petronela-Bianca Pavel et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Transport and Metabolism in Legume-Rhizobia Symbioses

(2013) Michael Udvardi et al.   Annual Review of Plant Biology

Phylogeography based on intraspecific sequence variation in chloroplast DNA of Miscanthus sinensis (Poaceae), a native pioneer grass in Japan

(2013) Yoshiko Shimono et al.   Botany

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils

(2012) Astrid Naether et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Reproducibility and quantitation of amplicon sequencing-based detection

(2011) Jizhong Zhou et al.   ISME Journal

Anthyllis vulneraria/Mesorhizobium metallidurans, an efficient symbiotic nitrogen fixing association able to grow in mine tailings highly contaminated by Zn, Pb and Cd

(2011) Stephanie Mahieu et al.   PLANT AND SOIL

Genetic diversity and characterization of heavy metal-resistant-endophytic bacteria from two copper-tolerant plant species on copper mine wasteland

(2009) Le-Ni Sun et al.   BIORESOURCE TECHNOLOGY

Endophytic bacteria and their potential to enhance heavy metal phytoextraction

(2009) Mani Rajkumar et al.   CHEMOSPHERE

Rhizosphere: biophysics, biogeochemistry and ecological relevance

(2009) Philippe Hinsinger et al.   PLANT AND SOIL

The rhizosphere: complex by design

(2008) D. L. Jones et al.   PLANT AND SOIL

Rhizosphere processes and management in plant-assisted bioremediation (phytoremediation) of soils

(2008) Walter W. Wenzel   PLANT AND SOIL

“Acid extractable” metal concentrations in solid matrices: A comparison and evaluation of operationally defined extraction procedures and leaching tests

(2008) V CAPPUYNS et al.   TALANTA

Rhizosphere bacteria help plants tolerate abiotic stress

(2008) Jungwook Yang et al.   TRENDS IN PLANT SCIENCE