Effects of plant community history, soil legacy and plant diversity on soil microbial communities

Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

(2020) Thorsten Thiergart et al.   Nature Ecology & Evolution

Community‐level interactions between plants and soil biota during range expansion

(2020) K Koorem et al.   JOURNAL OF ECOLOGY

Towards Unraveling Macroecological Patterns in Rhizosphere Microbiomes

(2020) Caroline Brunel et al.   TRENDS IN PLANT SCIENCE

The biodiversity - N cycle relationship: a 15N tracer experiment with soil from plant mixtures of varying diversity to model N pool sizes and transformation rates

(2020) Soni Lama et al.   BIOLOGY AND FERTILITY OF SOILS

Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe

(2020) Leho Tedersoo et al.   Frontiers in Microbiology

Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome

(2019) Joy Bergelson et al.   Scientific Reports

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Plant responses to diversity‐driven selection and associated rhizosphere microbial communities

(2019) Terhi Hahl et al.   FUNCTIONAL ECOLOGY

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Microbial community structure and functions differ between native and novel (exotic-dominated) grassland ecosystems in an 8-year experiment

(2018) Aleksandra Checinska Sielaff et al.   PLANT AND SOIL

Feedbacks of plant identity and diversity on the diversity and community composition of rhizosphere microbiomes from a long-term biodiversity experiment

(2018) Marc W. Schmid et al.   MOLECULAR ECOLOGY

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Fungal diversity regulates plant-soil feedbacks in temperate grassland

(2018) Marina Semchenko et al.   Science Advances

Beyond biomass: Soil feedbacks are transient over plant life stages and alter fitness

(2017) Jan-Hendrik Dudenhöffer et al.   JOURNAL OF ECOLOGY

A guide to analyzing biodiversity experiments

(2017) Bernhard Schmid et al.   Journal of Plant Ecology

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

A guide to analyzing biodiversity experiments

(2017) Bernhard Schmid et al.   Journal of Plant Ecology

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Strigolactones in the Rhizobium-legume symbiosis: Stimulatory effect on bacterial surface motility and down-regulation of their levels in nodulated plants

(2016) María A. Peláez-Vico et al.   PLANT SCIENCE

Plant selection and soil legacy enhance long-term biodiversity effects

(2015) Debra Leanne Zuppinger-Dingley et al.   ECOLOGY

Plant community richness and microbial interactions structure bacterial communities in soil

(2015) Daniel C. Schlatter et al.   ECOLOGY

Plant diversity increases soil microbial activity and soil carbon storage

(2015) Markus Lange et al.   Nature Communications

lavaan: AnRPackage for Structural Equation Modeling

(2015) Yves Rosseel   Journal of Statistical Software

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Heterogeneity in plant-soil feedbacks and resident population dynamics affect mutual invasibility

(2014) Jean H. Burns et al.   JOURNAL OF ECOLOGY

Soil Fungal Communities Respond to Grassland Plant Community Richness and Soil Edaphics

(2014) Nicholas LeBlanc et al.   MICROBIAL ECOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Selection for niche differentiation in plant communities increases biodiversity effects

(2014) Debra Zuppinger-Dingley et al.   NATURE

Intraspecific and intergenerational differences in plant-soil feedbacks

(2014) Cameron Wagg et al.   OIKOS

The relative importance of rapid evolution for plant-microbe interactions depends on ecological context

(2014) C. P. terHorst et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Are there evolutionary consequences of plant-soil feedbacks along soil gradients?

(2013) Jennifer A. Schweitzer et al.   FUNCTIONAL ECOLOGY

Biotic plant-soil feedbacks across temporal scales

(2013) Paul Kardol et al.   JOURNAL OF ECOLOGY

Plant-soil feedbacks: the past, the present and future challenges

(2013) Wim H. van der Putten et al.   JOURNAL OF ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Soil Environmental Conditions and Microbial Build-Up Mediate the Effect of Plant Diversity on Soil Nitrifying and Denitrifying Enzyme Activities in Temperate Grasslands

(2013) Xavier Le Roux et al.   PLoS One

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Net ammonification as influenced by plant diversity in experimental grasslands

(2012) Stephan Rosenkranz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits

(2011) Jennifer A. Lau et al.   NEW PHYTOLOGIST

TaqMan Real-Time PCR Assays To Assess Arbuscular Mycorrhizal Responses to Field Manipulation of Grassland Biodiversity: Effects of Soil Characteristics, Plant Species Richness, and Functional Traits

(2010) S. Konig et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Divergent composition but similar function of soil food webs of individual plants: plant species and community effects

(2010) T. M. Bezemer et al.   ECOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Plant-soil feedback: experimental approaches, statistical analyses and ecological interpretations

(2010) E. Pernilla Brinkman et al.   JOURNAL OF ECOLOGY

Experimental niche evolution alters the strength of the diversity–productivity relationship

(2010) Dominique Gravel et al.   NATURE

JANZEN-CONNELL EFFECTS ARE WIDESPREAD AND STRONG ENOUGH TO MAINTAIN DIVERSITY IN GRASSLANDS

(2008) Jana S. Petermann et al.   ECOLOGY

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS