Uncovering Microbial Composition in Human Breast Cancer Primary Tumour Tissue Using Transcriptomic RNA-seq

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

(2021) Francesco Beghini et al.   eLife

An atlas of the tissue and blood metagenome in cancer reveals novel links between bacteria, viruses and cancer

(2021) Sven Borchmann   Microbiome

Significance of human microbiome in breast cancer: Tale of an invisible and an invincible

(2020) Jatin Chadha et al.   SEMINARS IN CANCER BIOLOGY

Evaluation of methods for detecting human reads in microbial sequencing datasets

(2020) Stephen J. Bush et al.   Microbial Genomics

Increased Stromal Infiltrating Lymphocytes Are Associated with the Risk of Disease Progression in Mesenchymal Circulating Tumor Cell-Positive Primary Breast Cancer Patients

(2020) Bozena Smolkova et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Circulating Tumor Cells With Epithelial–to–mesenchymal Transition Phenotypes Associated With Inferior Outcomes in Primary Breast Cancer

(2019) MICHAL MEGO et al.   ANTICANCER RESEARCH

The microbiome and breast cancer: a review

(2019) Jennifer Chen et al.   BREAST CANCER RESEARCH AND TREATMENT

Advances and Challenges in Metatranscriptomic Analysis

(2019) Migun Shakya et al.   Frontiers in Genetics

A microbiome reality check: limitations of in silico ‐based metagenomic approaches to study complex bacterial communities

(2019) Gabriele Andrea Lugli et al.   Environmental Microbiology Reports

The microbiome and cancer

(2018) Brian Goodman et al.   JOURNAL OF PATHOLOGY

Distinct Microbial Signatures Associated With Different Breast Cancer Types

(2018) Sagarika Banerjee et al.   Frontiers in Microbiology

Breast Cancer and Its Relationship with the Microbiota

(2018) Mariana Fernández et al.   International Journal of Environmental Research and Public Health

Characterization of human breast tissue microbiota from core needle biopsies through the analysis of multi hypervariable 16S-rRNA gene regions

(2018) Lara Costantini et al.   Scientific Reports

Gut microbiota modulation of chemotherapy efficacy and toxicity

(2017) James L. Alexander et al.   Nature Reviews Gastroenterology & Hepatology

Breast tissue, oral and urinary microbiomes in breast cancer

(2017) Hannah Wang et al.   Oncotarget

A comprehensive analysis of breast cancer microbiota and host gene expression

(2017) Kevin J. Thompson et al.   PLoS One

The Microbiota of Breast Tissue and Its Association with Breast Cancer

(2016) Camilla Urbaniak et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Characterization of the microbiome of nipple aspirate fluid of breast cancer survivors

(2016) Alfred A. Chan et al.   Scientific Reports

The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease

(2016) Tina J. Hieken et al.   Scientific Reports

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Gut Microbiome

(2015) Gail A. Cresci et al.   NUTRITION IN CLINICAL PRACTICE

Distinct microbiological signatures associated with triple negative breast cancer

(2015) Sagarika Banerjee et al.   Scientific Reports

Microbiota of Human Breast Tissue

(2014) Camilla Urbaniak et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Microbial Dysbiosis Is Associated with Human Breast Cancer

(2014) Caiyun Xuan et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Lactococcus lactis subsp. cremoris FC triggers IFN-γ production from NK and T cells via IL-12 and IL-18

(2012) Akemi Kosaka et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study

(2012) Roberto Flores et al.   Journal of Translational Medicine

Global burden of cancers attributable to infections in 2008: a review and synthetic analysis

(2012) Catherine de Martel et al.   LANCET ONCOLOGY

Minireview: Inflammation: An Instigator of More Aggressive Estrogen Receptor (ER) Positive Breast Cancers

(2012) Sarah C. Baumgarten et al.   MOLECULAR ENDOCRINOLOGY

Association of Fecal Microbial Diversity and Taxonomy with Selected Enzymatic Functions

(2012) Roberto Flores et al.   PLoS One

ART: a next-generation sequencing read simulator

(2011) Weichun Huang et al.   BIOINFORMATICS

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

(2011) M. Castellarin et al.   GENOME RESEARCH

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Human gut microbiome: the second genome of human body

(2010) Baoli Zhu et al.   Protein & Cell

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A microbial symbiosis factor prevents intestinal inflammatory disease

(2008) Sarkis K. Mazmanian et al.   NATURE