Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant–Microbe Interactions

Specialized Plant Growth Chamber Designs to Study Complex Rhizosphere Interactions

(2021) Mon Oo Yee et al.   Frontiers in Microbiology

Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling

(2020) Elisa Korenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Gaseous Milieu: Extending the Boundaries of the Rhizosphere

(2020) Anne de la Porte et al.   TRENDS IN MICROBIOLOGY

CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant–Microbe Interactions

(2020) Bing Wang et al.   ACS Synthetic Biology

Rhizosphere size and shape: Temporal dynamics and spatial stationarity

(2019) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures

(2019) Robail Yasrab et al.   GigaScience

MyROOT 2.0: An automatic tool for high throughput and accurate primary root length measurement

(2019) Alejandro González et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Need for Laboratory Ecosystems To Unravel the Structures and Functions of Soil Microbial Communities Mediated by Chemistry

(2018) Kateryna Zhalnina et al.   mBio

Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions

(2018) Jian Gao et al.   Jove-Journal of Visualized Experiments

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass

(2018) Joelle Sasse et al.   NEW PHYTOLOGIST

An evaluation of inexpensive methods for root image acquisition when using rhizotrons

(2017) Awaz Mohamed et al.   Plant Methods

Live imaging of root–bacteria interactions in a microfluidics setup

(2017) Hassan Massalha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots

(2016) Larry M. York et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat

(2016) Akitomo Kawasaki et al.   PLoS One

Evolution of bacterial communities in the wheat crop rhizosphere

(2014) Suzanne Donn et al.   ENVIRONMENTAL MICROBIOLOGY

scikit-image: image processing in Python

(2014) Stéfan van der Walt et al.   PeerJ

The fluorescent protein palette: tools for cellular imaging

(2009) Richard N. Day et al.   CHEMICAL SOCIETY REVIEWS

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL