Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR

Molecular Changes Induced in Melanoma by Cell Culturing in 3D Alginate Hydrogels

(2021) Melanie Kappelmann-Fenzl et al.   Cancers

Enhancing Diagnosis Through RNA Sequencing

(2020) David R. Murdock   CLINICS IN LABORATORY MEDICINE

Increased comparability between RNA-Seq and microarray data by utilization of gene sets

(2020) Frans M. van der Kloet et al.   PLoS Computational Biology

RNA sequencing: the teenage years

(2019) Rory Stark et al.   NATURE REVIEWS GENETICS

Extracellular acidosis triggers a senescence‐like phenotype in human melanoma cells

(2019) Ines Böhme et al.   Pigment Cell & Melanoma Research

C-Jun drives melanoma progression in PTEN wild type melanoma cells

(2019) Melanie Kappelmann-Fenzl et al.   Cell Death & Disease

Robust identification of differentially expressed genes from RNA-seq data

(2019) Md. Shahjaman et al.   GENOMICS

Prediction and Analysis of Skin Cancer Progression using Genomics Profiles of Patients

(2019) Sherry Bhalla et al.   Scientific Reports

miR-488-5p and its role in melanoma

(2019) Jessica Arnold et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY

CXCL5 Facilitates Melanoma Cell–Neutrophil Interaction and Lymph Node Metastasis

(2018) Ana Soler-Cardona et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas

(2018) Manfred Kunz et al.   ONCOGENE

Expression and clinical significance of S100 family genes in patients with melanoma

(2018) Xiong Tingfeng et al.   MELANOMA RESEARCH

The impact of RNA secondary structure on read start locations on the Illumina sequencing platform

(2017) Adam Price et al.   PLoS One

Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data

(2017) Celine Everaert et al.   Scientific Reports

Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing

(2016) Andreas Mayer et al.   Nature Protocols

RNA-Seq methods for transcriptome analysis

(2016) Radmila Hrdlickova et al.   Wiley Interdisciplinary Reviews-RNA

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

(2015) Malachi Griffith et al.   PLoS Computational Biology

Tg(Grm1) transgenic mice: A murine model that mimics spontaneous uveal melanoma in humans?

(2014) Susanne Schiffner et al.   EXPERIMENTAL EYE RESEARCH

An atlas of active enhancers across human cell types and tissues

(2014) Robin Andersson et al.   NATURE

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

(2014) Charles Wang et al.   NATURE BIOTECHNOLOGY

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

(2014)   NATURE BIOTECHNOLOGY

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

MicroRNA miR-125b controls melanoma progression by direct regulation of c-Jun protein expression

(2012) M Kappelmann et al.   ONCOGENE

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

MicroRNA miR-196a controls melanoma-associated genes by regulating HOX-C8 expression

(2010) Daniel W. Mueller et al.   INTERNATIONAL JOURNAL OF CANCER

Estimating accuracy of RNA-Seq and microarrays with proteomics

(2009) Xing Fu et al.   BMC GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS