Hypervirulent Klebsiella pneumoniae Sequence Type 420 with a Chromosomally Inserted Virulence Plasmid

A Klebsiella variicola Plasmid Confers Hypermucoviscosity-Like Phenotype and Alters Capsule Production and Virulence

(2021) Nadia Rodríguez-Medina et al.   Frontiers in Microbiology

Colonization with Staphylococcus aureus and Klebsiella pneumoniae causes infections in a Vietnamese intensive care unit

(2021) Duong Bich Thuy et al.   Microbial Genomics

A systematic analysis of hypermucoviscosity and capsule reveals distinct and overlapping genes that impact Klebsiella pneumoniae fitness

(2021) Laura A. Mike et al.   PLoS Pathogens

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

(2021) Margaret M. C. Lam et al.   Nature Communications

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genomic and Phenotypic Analysis of an ESBL-Producing E. coli ST1159 Clonal Lineage From Wild Birds in Mongolia

(2020) Peter Schierack et al.   Frontiers in Microbiology

A Klebsiella pneumoniae ST307 outbreak clone from Germany demonstrates features of extensive drug resistance, hypermucoviscosity, and enhanced iron acquisition

(2020) Stefan E. Heiden et al.   Genome Medicine

Hypervirulent Klebsiella pneumoniae

(2019) Thomas A. Russo et al.   CLINICAL MICROBIOLOGY REVIEWS

An Outbreak of Carbapenem-Resistant and Hypervirulent Klebsiella pneumoniae in an Intensive Care Unit of a Major Teaching Hospital in Wenzhou, China

(2019) Yajie Zhao et al.   Frontiers in Public Health

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Whole genome analysis of hypervirulent Klebsiella pneumoniae isolates from community and hospital acquired bloodstream infection

(2018) Chaitra Shankar et al.   BMC MICROBIOLOGY

Identification of biomarkers for the differentiation of hypervirulent Klebsiella pneumoniae from classical K. pneumoniae

(2018) Thomas A Russo et al.   JOURNAL OF CLINICAL MICROBIOLOGY

ESBL-plasmid carriage in E. coli enhances in vitro bacterial competition fitness and serum resistance in some strains of pandemic sequence types without overall fitness cost

(2018) Amit Ranjan et al.   Gut Pathogens

Hypervirulent Klebsiella pneumoniae: a new public health threat

(2018) Candace M Marr et al.   Expert Review of Anti-Infective Therapy

VFDB 2019: a comparative pathogenomic platform with an interactive web interface

(2018) Bo Liu et al.   NUCLEIC ACIDS RESEARCH

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

(2018) Margaret M. C. Lam et al.   Genome Medicine

Hypervirulence and hypermucoviscosity: Two different but complementary Klebsiella spp. phenotypes?

(2017) Juan Carlos Catalán-Nájera et al.   Virulence

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Modified microplate method for rapid and efficient estimation of siderophore produced by bacteria

(2017) Naveen Kumar Arora et al.   3 Biotech

Modified microplate method for rapid and efficient estimation of siderophore produced by bacteria

(2017) Naveen Kumar Arora et al.   3 Biotech

Klebsiella pneumoniae Liver Abscess: An Emerging Disease

(2016) Tasaduq Fazili et al.   AMERICAN JOURNAL OF THE MEDICAL SCIENCES

High Prevalence of Hypervirulent Klebsiella pneumoniae Infection in China: Geographic Distribution, Clinical Characteristics, and Antimicrobial Resistance

(2016) Yawei Zhang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Effect in virulence of switching conserved homologous capsular polysaccharide genes from Klebsiella pneumoniae serotype K1 into K20

(2016) Chii-Lan Lin et al.   Virulence

The contribution of capsule polysaccharide genes to virulence of Klebsiella pneumoniae

(2016) Kwan Soo Ko   Virulence

Integrative and Conjugative Elements (ICEs): What They Do and How They Work

(2015) Christopher M. Johnson et al.   Annual Review of Genetics

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Molecular epidemiology and virulence factors of pyogenic liver abscess causing Klebsiella pneumoniae in China

(2014) Y. Luo et al.   CLINICAL MICROBIOLOGY AND INFECTION

Aerobactin Mediates Virulence and Accounts for Increased Siderophore Production under Iron-Limiting Conditions by Hypervirulent (Hypermucoviscous) Klebsiella pneumoniae

(2014) T. A. Russo et al.   INFECTION AND IMMUNITY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

Hypervirulent (hypermucoviscous)Klebsiella pneumoniae

(2013) Alyssa S. Shon et al.   Virulence

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

genoPlotR: comparative gene and genome visualization in R

(2010) L. Guy et al.   BIOINFORMATICS

Correlation between Klebsiella pneumoniae carrying pLVPK-derived loci and abscess formation

(2010) H.-L. Tang et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

RmpA Regulation of Capsular Polysaccharide Biosynthesis in Klebsiella pneumoniae CG43

(2010) H. Y. Cheng et al.   JOURNAL OF BACTERIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS