Allelic diversification after transposable element exaptation promoted gsdf as the master sex determining gene of sablefish

The rise and fall of the ancient northern pike master sex-determining gene

(2021) Qiaowei Pan et al.   eLife

Molecular and morphological sex differentiation in sablefish (Anoplopoma fimbria), a marine teleost with XX/XY sex determination

(2020) Edward S. Hayman et al.   GENE

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

(2019) Qiaowei Pan et al.   PLoS Genetics

Sox5 is involved in germ-cell regulation and sex determination in medaka following co-option of nested transposable elements

(2018) Manfred Schartl et al.   BMC BIOLOGY

Production of donor-derived offspring by allogeneic transplantation of spermatogonia in Chinese rosy bitterling†

(2018) Anna Octavera et al.   BIOLOGY OF REPRODUCTION

Vertebrate sex-determining genes play musical chairs

(2016) Qiaowei Pan et al.   COMPTES RENDUS BIOLOGIES

Dmy initiates masculinity by altering Gsdf/Sox9a2/Rspo1 expression in medaka (Oryzias latipes)

(2016) Tapas Chakraborty et al.   Scientific Reports

Autosomal gsdf acts as a male sex initiator in the fish medaka

(2016) Xi Zhang et al.   Scientific Reports

Culture of sablefish (Anoplopoma fimbria) larvae in four experimental tank designs

(2015) Matthew A. Cook et al.   AQUACULTURAL ENGINEERING

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Plasticity of gene-regulatory networks controlling sex determination: of masters, slaves, usual suspects, newcomers, and usurpators

(2015) A. Herpin et al.   EMBO REPORTS

Transposable Elements and DNA Methylation Create in Embryonic Stem Cells Human-Specific Regulatory Sequences Associated with Distal Enhancers and Noncoding RNAs

(2015) Gennadi V. Glinsky   Genome Biology and Evolution

Gonadal soma-derived factor ( gsdf ), a TGF-beta superfamily gene, induces testis differentiation in the teleost fish Oreochromis niloticus

(2015) Hiroyo Kaneko et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

MIR retrotransposon sequences provide insulators to the human genome

(2015) Jianrong Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A family of transposable elements co-opted into developmental enhancers in the mouse neocortex

(2015) James H. Notwell et al.   Nature Communications

Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy

(2015) Vincent J. Lynch et al.   Cell Reports

Turnover of Sex Chromosomes in Celebensis Group Medaka Fishes

(2015) Taijun Myosho et al.   G3-Genes Genomes Genetics

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena

(2014) Yusuke Takehana et al.   Nature Communications

Retroviruses facilitate the rapid evolution of the mammalian placenta

(2013) Edward B. Chuong   BIOESSAYS

Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene

(2013) Eric B Rondeau et al.   BMC GENOMICS

Novel sex-determining genes in fish and sex chromosome evolution

(2013) Kiyoshi Kikuchi et al.   DEVELOPMENTAL DYNAMICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of Sex Determination and Sex Differentiation Genes in Latimeria

(2013) Mariko Forconi et al.   PLoS One

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

(2013) Aurélie Kapusta et al.   PLoS Genetics

Transposable Elements: An Abundant and Natural Source of Regulatory Sequences for Host Genes

(2012) Rita Rebollo et al.   Annual Review of Genetics

Tracing the Emergence of a Novel Sex-Determining Gene in Medaka, Oryzias luzonensis

(2012) T. Myosho et al.   GENETICS

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Dmrt1genes at the crossroads: a widespread and central class of sexual development factors in fish

(2011) Amaury Herpin et al.   FEBS Journal

Convergent Evolution of Endometrial Prolactin Expression in Primates, Mice, and Elephants Through the Independent Recruitment of Transposable Elements

(2011) Deena Emera et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals

(2011) Vincent J Lynch et al.   NATURE GENETICS

The gsdf gene locus harbors evolutionary conserved and clustered genes preferentially expressed in fish previtellogenic oocytes

(2010) Aude Gautier et al.   GENE

Follicle-stimulating hormone regulation of ovarian transcripts for steroidogenesis-related proteins and cell survival, growth and differentiation factors in vitro during early secondary oocyte growth in coho salmon

(2010) J. Adam Luckenbach et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ectopic Expression of Single Transcription Factors Directs Differentiation of a Medaka Spermatogonial Cell Line

(2010) Eva C. Thoma et al.   STEM CELLS AND DEVELOPMENT

Transcriptional Rewiring of the Sex Determining dmrt1 Gene Duplicate by Transposable Elements

(2010) Amaury Herpin et al.   PLoS Genetics

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Molecular mechanisms of sex determination and evolution of the Y-chromosome: Insights from the medakafish (Oryzias latipes)

(2009) Amaury Herpin et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

A highly conserved cis -regulatory motif directs differential gonadal synexpression of Dmrt1 transcripts during gonad development

(2009) Amaury Herpin et al.   NUCLEIC ACIDS RESEARCH

Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)

(2009) Joseph A. Ross et al.   PLoS Genetics

Regulatory back-up circuit of medaka Wt1 co-orthologs ensures PGC maintenance

(2008) Nils Klüver et al.   DEVELOPMENTAL BIOLOGY

Regulatory putsches create new ways of determining sexual development

(2008) Amaury Herpin et al.   EMBO REPORTS

Sex determination involves synergistic action of SRY and SF1 on a specific Sox9 enhancer

(2008) Ryohei Sekido et al.   NATURE