Genomic architecture constrained placental mammal X Chromosome evolution
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Title
Genomic architecture constrained placental mammal X Chromosome evolution
Authors
Keywords
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Journal
GENOME RESEARCH
Volume 31, Issue 8, Pages 1353-1365
Publisher
Cold Spring Harbor Laboratory
Online
2021-07-22
DOI
10.1101/gr.275274.121
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Related references
Note: Only part of the references are listed.- Telomere-to-telomere assembly of a complete human X chromosome
- (2020) Karen H. Miga et al. NATURE
- An improved pig reference genome sequence to enable pig genetics and genomics research
- (2020) Amanda Warr et al. GigaScience
- A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism
- (2020) Reuben M. Buckley et al. PLoS Genetics
- Ultracontinuous single haplotype genome assemblies for the domestic cat (Felis catus) and Asian leopard cat (Prionailurus bengalensis)
- (2020) Kevin R Bredemeyer et al. JOURNAL OF HEREDITY
- Recombination-aware phylogenomics reveals the structured genomic landscape of hybridizing cat species
- (2019) Gang Li et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolutionary Models for the Diversification of Placental Mammals Across the KPg Boundary
- (2019) Mark S. Springer et al. Frontiers in Genetics
- SMCHD1 Merges Chromosome Compartments and Assists Formation of Super-Structures on the Inactive X
- (2018) Chen-Yu Wang et al. CELL
- Dynamic Copy Number Evolution of X- and Y-Linked Ampliconic Genes in Human Populations
- (2018) Elise A. Lucotte et al. GENETICS
- Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome
- (2018) G. Bonora et al. Nature Communications
- Dynamic Copy Number Evolution of X- and Y-Linked Ampliconic Genes in Human Populations
- (2018) Elise A. Lucotte et al. GENETICS
- Characterization of the ICCE Repeat in Mammals Reveals an Evolutionary Relationship with the DXZ4 Macrosatellite through Conserved CTCF Binding Motifs
- (2018) Natalia Westervelt et al. Genome Biology and Evolution
- Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci inDrosophila melanogaster
- (2017) Daniel E. Khost et al. GENOME RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Landscape of X chromosome inactivation across human tissues
- (2017) Taru Tukiainen et al. NATURE
- The X chromosome in space
- (2017) Teddy Jégu et al. NATURE REVIEWS GENETICS
- Reconstruction and evolutionary history of eutherian chromosomes
- (2017) Jaebum Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High-Resolution Maps of Mouse Reference Populations
- (2017) Petr Simecek et al. G3-Genes Genomes Genetics
- X Chromosome Evolution in Cetartiodactyla
- (2017) Anastasia Proskuryakova et al. Genes
- Genome-wide signatures of complex introgression and adaptive evolution in the big cats
- (2017) Henrique V. Figueiró et al. Science Advances
- Deletion ofDXZ4on the human inactive X chromosome alters higher-order genome architecture
- (2016) Emily M. Darrow et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination
- (2016) Gang Li et al. G3-Genes Genomes Genetics
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
- (2016) Neva C. Durand et al. Cell Systems
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
- (2015) Konstantin Berlin et al. NATURE BIOTECHNOLOGY
- Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing
- (2015) Huashui Ai et al. NATURE GENETICS
- Genetic variation and the de novo assembly of human genomes
- (2015) Mark J. P. Chaisson et al. NATURE REVIEWS GENETICS
- Extreme selective sweeps independently targeted the X chromosomes of the great apes
- (2015) Kiwoong Nam et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence
- (2015) Julien Y. Dutheil et al. PLoS Genetics
- The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation
- (2015) Fan Yang et al. GENOME BIOLOGY
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- A region of euchromatin coincides with an extensive tandem repeat on the mouse (Mus musculus) inactive X chromosome
- (2014) Emily M. Darrow et al. CHROMOSOME RESEARCH
- Reconstructing complex regions of genomes using long-read sequencing technology
- (2014) J. Huddleston et al. GENOME RESEARCH
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
- (2014) Michael J. Montague et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Acceleration of X-chromosome gene order evolution in the cattle lineage
- (2013) Woncheoul Park et al. BMB Reports
- Large, Male Germ Cell-Specific Hypomethylated DNA Domains With Unique Genomic and Epigenomic Features on the Mouse X Chromosome
- (2013) R. Ikeda et al. DNA RESEARCH
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Independent specialization of the human and mouse X chromosomes for the male germ line
- (2013) Jacob L Mueller et al. NATURE GENETICS
- The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome
- (2013) J. M. Engreitz et al. SCIENCE
- Reducing assembly complexity of microbial genomes with single-molecule sequencing
- (2013) Sergey Koren et al. GENOME BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome
- (2012) Andrea H. Horakova et al. HUMAN MOLECULAR GENETICS
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Chromosome X-encoded cancer/testis antigens show distinctive expression patterns in developing gonads and in testicular seminoma
- (2011) Y.-T. Chen et al. HUMAN REPRODUCTION
- The biology of cancer testis antigens: Putative function, regulation and therapeutic potential
- (2011) Elisabetta Fratta et al. Molecular Oncology
- Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification
- (2011) R. W. Meredith et al. SCIENCE
- Recombinational landscape of porcine X chromosome and individual variation in female meiotic recombination associated with haplotypes of Chinese pigs
- (2010) Junwu Ma et al. BMC GENOMICS
- Limitations of next-generation genome sequence assembly
- (2010) Can Alkan et al. NATURE METHODS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Physical mapping of the elephant X chromosome: conservation of gene order over 105 million years
- (2009) Claudia Leticia Rodríguez Delgado et al. CHROMOSOME RESEARCH
- A Comprehensive Linkage Map of the Dog Genome
- (2009) A. K. Wong et al. GENETICS
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- (2008) B. P. Chadwick GENOME RESEARCH
- The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression
- (2008) Jacob L Mueller et al. NATURE GENETICS
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