Condition-Specific Molecular Network Analysis Revealed That Flagellar Proteins Are Involved in Electron Transfer Processes of Shewanella piezotolerans WP3

Energy Taxis toward Redox-Active Surfaces Decreases the Transport of Electroactive Bacteria in Saturated Porous Media

(2021) Lecheng Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Geobacter autogenically secreted fulvic acid to facilitate the dissimilated iron reduction and vivianite recovery

(2020) Shu Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Electroactive microorganisms in bioelectrochemical systems

(2019) Bruce E. Logan et al.   NATURE REVIEWS MICROBIOLOGY

Flagella act as Geobacter biofilm scaffolds to stabilize biofilm and facilitate extracellular electron transfer

(2019) Xing Liu et al.   BIOSENSORS & BIOELECTRONICS

Genetic variants and protein–protein interactions: a multidimensional network-centric view

(2018) Anna Laddach et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A comprehensive evaluation of module detection methods for gene expression data

(2018) Wouter Saelens et al.   Nature Communications

Network-Based Methods for Identifying Key Active Proteins in the Extracellular Electron Transfer Process in Shewanella oneidensis MR-1

(2018) Dewu Ding et al.   Genes

Functional variomics and network perturbation: connecting genotype to phenotype in cancer

(2017) Song Yi et al.   NATURE REVIEWS GENETICS

Network propagation: a universal amplifier of genetic associations

(2017) Lenore Cowen et al.   NATURE REVIEWS GENETICS

Regulation of Gene Expression in Shewanella oneidensis MR-1 during Electron Acceptor Limitation and Bacterial Nanowire Formation

(2016) Sarah E. Barchinger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A transcriptome resource for the deep-sea bacterium Shewanella piezotolerans WP3 under cold and high hydrostatic pressure shock stress

(2016) Huahua Jian et al.   Marine Genomics

Global transcriptome analysis of the heat shock response of the deep-sea bacterium Shewanella piezotolerans WP3

(2016) Huahua Jian et al.   Marine Genomics

Extracellular electron transfer mechanisms between microorganisms and minerals

(2016) Liang Shi et al.   NATURE REVIEWS MICROBIOLOGY

Characterization of the relationship between polar and lateral flagellar structural genes in the deep-sea bacterium Shewanella piezotolerans WP3

(2016) Huahua Jian et al.   Scientific Reports

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

(2015) Min Tang et al.   BMC BIOINFORMATICS

A dynamic periplasmic electron transfer network enables respiratory flexibility beyond a thermodynamic regulatory regime

(2015) Gunnar Sturm et al.   ISME Journal

Multi-haem cytochromes in Shewanella oneidensis MR-1: structures, functions and opportunities

(2014) M. Breuer et al.   Journal of the Royal Society Interface

Identifying the potential extracellular electron transfer pathways from a c-type cytochrome network

(2014) De-Wu Ding et al.   Molecular BioSystems

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components

(2014) S. Pirbadian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Iron reduction and mineralization of deep-sea iron reducing bacteriumShewanella piezotoleransWP3 at elevated hydrostatic pressures

(2013) W. F. Wu et al.   Geobiology

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

Detecting overlapping protein complexes in protein-protein interaction networks

(2012) Tamás Nepusz et al.   NATURE METHODS

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Construction and application of dynamic protein interaction network based on time course gene expression data

(2012) Jianxin Wang et al.   PROTEOMICS

Energy Complexes Are Apparently Associated with the Switch–Motor Complex of Bacterial Flagella

(2011) Gabriel Zarbiv et al.   JOURNAL OF MOLECULAR BIOLOGY

Shewanella oneidensis MR-1 Msh pilin proteins are involved in extracellular electron transfer in microbial fuel cells

(2011) Lisa A. Fitzgerald et al.   PROCESS BIOCHEMISTRY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Physiological and evolutionary studies of NAP systems in Shewanella piezotolerans WP3

(2010) Ying Chen et al.   ISME Journal

Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration

(2010) Haichun Gao et al.   Microbial Biotechnology

Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA

(2009) Haichun Gao et al.   ISME Journal

A mechanistic and electrochemical study of the interaction between dimethyl sulfide dehydrogenase and its electron transfer partner cytochrome c 2

(2008) Nicole L. Creevey et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Environmental Adaptation: Genomic Analysis of the Piezotolerant and Psychrotolerant Deep-Sea Iron Reducing Bacterium Shewanella piezotolerans WP3

(2008) Fengping Wang et al.   PLoS One