Interkingdom plant-microbial ecological networks under selective and clear cutting of tropical rainforest

Soil fungal networks maintain local dominance of ectomycorrhizal trees

(2020) Minxia Liang et al.   Nature Communications

The soybean rhizosphere: metabolites, microbes, and beyond—A review

(2019) Akifumi Sugiyama   Journal of Advanced Research

Rare taxa of alkaline phosphomonoesterase-harboring microorganisms mediate soil phosphorus mineralization

(2019) Xiaomeng Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Interdomain ecological networks between plants and microbes

(2019) Kai Feng et al.   Molecular Ecology Resources

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Fertility‐related interplay between fungal guilds underlies plant richness‐productivity relationships in natural grasslands

(2019) Wenqing Chen et al.   NEW PHYTOLOGIST

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deforestation decreases spatial turnover and alters the network interactions in soil bacterial communities

(2018) Jing Tian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Deforestation intensifies hot days

(2018) Paul C. Stoy   Nature Climate Change

Climate warming leads to divergent succession of grassland microbial communities

(2018) Xue Guo et al.   Nature Climate Change

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Amazonian deforestation and soil biodiversity

(2018) André L.C. Franco et al.   CONSERVATION BIOLOGY

Historical logging alters soil fungal community composition and network in a tropical rainforest

(2018) Jie Chen et al.   FOREST ECOLOGY AND MANAGEMENT

Fungal mitochondrial oxygen consumption induces the growth of strict anaerobic bacteria

(2017) Joost M. Lambooij et al.   FUNGAL GENETICS AND BIOLOGY

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Trees harness the power of microbes to survive climate change

(2017) Jennifer A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Belowground drivers of plant diversity

(2017) Wim H. van der Putten   SCIENCE

Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics

(2017) Jonathan A. Bennett et al.   SCIENCE

Plant-soil feedback and the maintenance of diversity in Mediterranean-climate shrublands

(2017) François P. Teste et al.   SCIENCE

The impacts of selective logging and clear-cutting on woody plant diversity after 40 years of natural recovery in a tropical montane rain forest, south China

(2017) Yi Ding et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Diversity and co-occurrence network of soil fungi are more responsive than those of bacteria to shifts in precipitation seasonality in a subtropical forest

(2017) Dan He et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mycorrhizal and saprotrophic fungal guilds compete for the same organic substrates but affect decomposition differently

(2016) Inga T. M. Bödeker et al.   FUNCTIONAL ECOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Ericaceous plant-fungus network in a harsh alpine-subalpine environment

(2016) H. Toju et al.   MOLECULAR ECOLOGY

Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition

(2016) Witoon Purahong et al.   MOLECULAR ECOLOGY

The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria

(2016) Max-Bernhard Ballhausen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Losses of soil carbon by converting tropical forest to plantations: erosion and decomposition estimated byδ13C

(2015) Thomas Guillaume et al.   GLOBAL CHANGE BIOLOGY

Molecular mechanisms underlying the close association between soil Burkholderia and fungi

(2015) Nejc Stopnisek et al.   ISME Journal

Partial recovery of a tropical rain forest a half-century after clear-cut and selective logging

(2015) Han Xu et al.   JOURNAL OF APPLIED ECOLOGY

Oxalic acid: a signal molecule for fungus-feeding bacteria of the genusCollimonas?

(2015) M. B. Rudnick et al.   Environmental Microbiology Reports

Below-ground plant-fungus network topology is not congruent with above-ground plant-animal network topology

(2015) H. Toju et al.   Science Advances

The impact of selective logging and clearcutting on forest structure, tree diversity and above-ground biomass of African tropical forests

(2014) Roberto Cazzolla Gatti et al.   ECOLOGICAL RESEARCH

Deforestation and Cultivation with Maize (Zea maysL.) has a Profound Effect on the Bacterial Community Structure in Soil

(2014) Elizabeth Selene Gómez-Acata et al.   LAND DEGRADATION & DEVELOPMENT

The Origin and Early Evolution of Roots

(2014) P. Kenrick et al.   PLANT PHYSIOLOGY

Assembly of complex plant–fungus networks

(2014) Hirokazu Toju et al.   Nature Communications

Impact of Logging and Forest Conversion to Oil Palm Plantations on Soil Bacterial Communities in Borneo

(2013) Larisa Lee-Cruz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Response of Free-Living Nitrogen-Fixing Microorganisms to Land Use Change in the Amazon Rainforest

(2013) Babur S. Mirza et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Are ectomycorrhizal fungi alleviating or aggravating nitrogen limitation of tree growth in boreal forests?

(2013) Torgny Näsholm et al.   NEW PHYTOLOGIST

Fungal networks in yield-invigorating and -debilitating soils induced by prolonged potato monoculture

(2013) Lihua Lu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities

(2012) J. L. M. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Pathogen impacts on plant communities: unifying theory, concepts, and empirical work

(2011) Erin A. Mordecai   ECOLOGICAL MONOGRAPHS

Effects of forest biomass harvesting on soil productivity in boreal and temperate forests — A review

(2011) Evelyne Thiffault et al.   ENVIRONMENTAL REVIEWS

Competitive context alters plant–soil feedback in an experimental woodland community

(2011) Sarah Shannon et al.   OECOLOGIA

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Weighted-Interaction Nestedness Estimator (WINE): A new estimator to calculate over frequency matrices

(2009) Javier Galeano et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Short-term effects of selection and clear cutting on the shrub and herb layer vegetation during the conversion of even-aged Norway spruce stands into mixed stands

(2009) Steffi Heinrichs et al.   FOREST ECOLOGY AND MANAGEMENT

Changes in land use alter the structure of bacterial communities in Western Amazon soils

(2009) Ederson da C Jesus et al.   ISME Journal

Socialism in soil? The importance of mycorrhizal fungal networks for facilitation in natural ecosystems

(2009) Marcel G. A. van der Heijden et al.   JOURNAL OF ECOLOGY