Models of stochastic $$\hbox {Ca}^{2+}$$ spiking

IP3 mediated global Ca2+ signals arise through two temporally and spatially distinct modes of Ca2+ release

(2020) Jeffrey T Lock et al.   eLife

ER-luminal [Ca2+] regulation of InsP3 receptor gating mediated by an ER-luminal peripheral Ca2+-binding protein

(2020) Horia Vais et al.   eLife

Deterministic Limit of Intracellular Calcium Spikes

(2019) V. Voorsluijs et al.   PHYSICAL REVIEW LETTERS

On the phase space structure of IP3 induced Ca2+ signalling and concepts for predictive modeling

(2018) Martin Falcke et al.   CHAOS

The stretch to stray on time: Resonant length of random walks in a transient

(2018) Martin Falcke et al.   CHAOS

All three IP3 receptor isoforms generate Ca2+ puffs that display similar characteristics

(2018) Jeffrey T. Lock et al.   Science Signaling

Exact analytical results for integrate-and-fire neurons driven by excitatory shot noise

(2017) Felix Droste et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

On the dynamical structure of calcium oscillations

(2017) James Sneyd et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noisy Juxtacellular Stimulation In Vivo Leads to Reliable Spiking and Reveals High-Frequency Coding in Single Neurons

(2016) J. Doose et al.   JOURNAL OF NEUROSCIENCE

Differential Regulation of Multiple Steps in Inositol 1,4,5-Trisphosphate Signaling by Protein Kinase C Shapes Hormone-stimulated Ca2+Oscillations

(2015) Paula J. Bartlett et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Statistical structure of neural spiking under non-Poissonian or other non-white stimulation

(2015) Tilo Schwalger et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Interspike interval correlation in a stochastic exponential integrate-and-fire model with subthreshold and spike-triggered adaptation

(2015) LieJune Shiau et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Information filtering in resonant neurons

(2015) Sven Blankenburg et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Slow fluctuations in recurrent networks of spiking neurons

(2015) Stefan Wieland et al.   PHYSICAL REVIEW E

Statistics of a neuron model driven by asymmetric colored noise

(2015) Finn Müller-Hansen et al.   PHYSICAL REVIEW E

What Is the Most Realistic Single-Compartment Model of Spike Initiation?

(2015) Romain Brette   PLoS Computational Biology

Termination of calcium puffs and coupled closings of inositol trisphosphate receptor channels

(2014) Steven M. Wiltgen et al.   CELL CALCIUM

Reliable Encoding of Stimulus Intensities Within Random Sequences of Intracellular Ca2+ Spikes

(2014) K. Thurley et al.   Science Signaling

Self-consistent determination of the spike-train power spectrum in a neural network with sparse connectivity

(2014) Benjamin Dummer et al.   Frontiers in Computational Neuroscience

A Deterministic Model Predicts the Properties of Stochastic Calcium Oscillations in Airway Smooth Muscle Cells

(2014) Pengxing Cao et al.   PLoS Computational Biology

Factors Determining the Recruitment of Inositol Trisphosphate Receptor Channels During Calcium Puffs

(2013) George D. Dickinson et al.   BIOPHYSICAL JOURNAL

A Stochastic Model of Calcium Puffs Based on Single-Channel Data

(2013) Pengxing Cao et al.   BIOPHYSICAL JOURNAL

Patterns of interval correlations in neural oscillators with adaptation

(2013) Tilo Schwalger et al.   Frontiers in Computational Neuroscience

A Kinetic Model for Type I and II IP3R Accounting for Mode Changes

(2012) Ivo Siekmann et al.   BIOPHYSICAL JOURNAL

The Probability of Triggering Calcium Puffs Is Linearly Related to the Number of Inositol Trisphosphate Receptors in a Cluster

(2012) George D. Dickinson et al.   BIOPHYSICAL JOURNAL

Information filtering by synchronous spikes in a neural population

(2012) Nahal Sharafi et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Channel Noise from Both Slow Adaptation Currents and Fast Currents Is Required to Explain Spike-Response Variability in a Sensory Neuron

(2012) K. Fisch et al.   JOURNAL OF NEUROSCIENCE

Intracellular calcium signals display an avalanche-like behavior over multiple lengthscales

(2012) Lucía Lopez et al.   Frontiers in Physiology

Timescales of IP3-Evoked Ca2+ Spikes Emerge from Ca2+ Puffs Only at the Cellular Level

(2011) Kevin Thurley et al.   BIOPHYSICAL JOURNAL

Vascular Endothelial Growth Factor Stimulates Endothelial Colony Forming Cells Proliferation and Tubulogenesis by Inducing Oscillations in Intracellular Ca2+ Concentration

(2011) Silvia Dragoni et al.   STEM CELLS

Nonrenewal spike train statistics: causes and functional consequences on neural coding

(2011) Oscar Avila-Akerberg et al.   EXPERIMENTAL BRAIN RESEARCH

Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs

(2011) Guillermo Solovey et al.   Frontiers in Physiology

Statistical analysis of calcium oscillations

(2010) A. Skupin et al.   European Physical Journal-Special Topics

Stimulus onset quenches neural variability: a widespread cortical phenomenon

(2010) Mark M Churchland et al.   NATURE NEUROSCIENCE

Response of Integrate-and-Fire Neurons to Noisy Inputs Filtered by Synapses with Arbitrary Timescales: Firing Rate and Correlations

(2010) Rubén Moreno-Bote et al.   NEURAL COMPUTATION

Stochastic fire-diffuse-fire model with realistic cluster dynamics

(2010) Ana Calabrese et al.   PHYSICAL REVIEW E

Firing-Rate Response of a Neuron Receiving Excitatory and Inhibitory Synaptic Shot Noise

(2010) Magnus J. E. Richardson et al.   PHYSICAL REVIEW LETTERS

Derivation of Ca2+ signals from puff properties reveals that pathway function is robust against cell variability but sensitive for control

(2010) K. Thurley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoding cytosolic Ca2+ oscillations

(2010) Anant B. Parekh   TRENDS IN BIOCHEMICAL SCIENCES

Calcium Oscillations

(2010) G. Dupont et al.   Cold Spring Harbor Perspectives in Biology

Calcium Signals Driven by Single Channel Noise

(2010) Alexander Skupin et al.   PLoS Computational Biology

How Noisy Adaptation of Neurons Shapes Interspike Interval Histograms and Correlations

(2010) Tilo Schwalger et al.   PLoS Computational Biology

A Kinetic Model of the Inositol Trisphosphate Receptor Based on Single-Channel Data

(2009) Elan Gin et al.   BIOPHYSICAL JOURNAL

From puffs to global Ca2+ signals: How molecular properties shape global signals

(2009) Alexander Skupin et al.   CHAOS

Waiting time distributions for clusters of receptors

(2009) Erin R. Higgins et al.   JOURNAL OF THEORETICAL BIOLOGY

Clustering of InsP3 receptors by InsP3 retunes their regulation by InsP3 and Ca2+

(2009) Taufiq-Ur-Rahman et al.   NATURE

Serial correlation in neural spike trains: Experimental evidence, stochastic modeling, and single neuron variability

(2009) Farzad Farkhooi et al.   PHYSICAL REVIEW E

Extracting non-linear integrate-and-fire models from experimental data using dynamic I–V curves

(2008) Laurent Badel et al.   BIOLOGICAL CYBERNETICS

Stochastic Aspects of Oscillatory Ca2+ Dynamics in Hepatocytes

(2008) Geneviève Dupont et al.   BIOPHYSICAL JOURNAL

Localization of puff sites adjacent to the plasma membrane: Functional and spatial characterization of Ca2+ signaling in SH-SY5Y cells utilizing membrane-permeant caged IP3

(2008) Ian F. Smith et al.   CELL CALCIUM

Establishing the stochastic nature of intracellular calcium oscillations from experimental data

(2007) Matjaž Perc et al.   BIOPHYSICAL CHEMISTRY

How Does Intracellular Ca2+ Oscillate: By Chance or by the Clock?

(2007) Alexander Skupin et al.   BIOPHYSICAL JOURNAL

Temperature and nitric oxide control spontaneous calcium transients in astrocytes

(2007) Carola G. Schipke et al.   CELL CALCIUM

Dynamic I-V Curves Are Reliable Predictors of Naturalistic Pyramidal-Neuron Voltage Traces

(2007) Laurent Badel et al.   JOURNAL OF NEUROPHYSIOLOGY