Revealing consensus gene pathways associated with respiratory functions and disrupted by PM2.5 nitrate exposure at bulk tissue and single cell resolution

Chronic Exposure to PM2.5 Nitrate, Sulfate, and Ammonium Causes Respiratory System Impairments in Mice

(2021) Jushan Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Candidate gene expression in response to low-level air pollution

(2020) Lina Madaniyazi et al.   ENVIRONMENT INTERNATIONAL

Breathing fresh air into respiratory research with single-cell RNA sequencing

(2020) Michael J. Alexander et al.   European Respiratory Review

Prenatal exposure to ambient air multi-pollutants significantly impairs intrauterine fetal development trajectory

(2020) Xiaowen Shao et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Single-cell sequencing techniques from individual to multiomics analyses

(2020) Yukie Kashima et al.   EXPERIMENTAL AND MOLECULAR MEDICINE

Integrative single-cell analysis

(2019) Tim Stuart et al.   NATURE REVIEWS GENETICS

Accurate estimation of cell-type composition from gene expression data

(2019) Daphne Tsoucas et al.   Nature Communications

Why Lungs Keep Time: Circadian Rhythms and Lung Immunity

(2019) Charles Nosal et al.   Annual Review of Physiology

Nitrate dominates the chemical composition of PM2.5 during haze event in Beijing, China

(2019) Qingcheng Xu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparative study on water-soluble inorganic ions in PM2.5 from two distinct climate regions and air quality

(2019) Duong Huu Huy et al.   Journal of Environmental Sciences-China

The characterization of water-soluble inorganic ions in PM2.5 during a winter period in Xi'an, China

(2018) Yongyong Zhang et al.   ENVIRONMENTAL FORENSICS

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Understanding the tumor immune microenvironment (TIME) for effective therapy

(2018) Mikhail Binnewies et al.   NATURE MEDICINE

Gene-by-environment interactions in urban populations modulate risk phenotypes

(2018) Marie-Julie Favé et al.   Nature Communications

Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis

(2018) Paul A Reyfman et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Airway microbiome is associated with respiratory functions and responses to ambient particulate matter exposure

(2018) Liping Wang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

(2018) et al.   NATURE

Sulfate–nitrate–ammonium as double salts in PM2.5: Direct observations and implications for haze events

(2018) Zhenli Sun et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Estimates and 25-year trends of the global burden of disease attributable to ambient air pollution: an analysis of data from the Global Burden of Diseases Study 2015

(2017) Aaron J Cohen et al.   LANCET

Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics

(2017) Jason C. H. Tsang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A subcellular map of the human proteome

(2017) Peter J. Thul et al.   SCIENCE

Particulate matter pollution over China and the effects of control policies

(2017) Jiandong Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Gene expression network analyses in response to air pollution exposures in the trucking industry

(2016) Jen-hwa Chu et al.   Environmental Health

Men and mice: Relating their ages

(2016) Sulagna Dutta et al.   LIFE SCIENCES

The meteorological modulation on PM 2.5 interannual oscillation during 2013 to 2015 in Shanghai, China

(2016) Jianming Xu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Relationship between differentially expressed mRNA and mRNA-protein correlations in a xenograft model system

(2015) Antonis Koussounadis et al.   Scientific Reports

Influenza A virus-dependent remodeling of pulmonary clock function in a mouse model of COPD

(2015) Isaac K. Sundar et al.   Scientific Reports

Characterization of PM2.5 Major Components and Source Investigation in Suburban Hong Kong: A One Year Monitoring Study

(2014) X.H. Hilda Huang et al.   Aerosol and Air Quality Research

Bayesian kernel machine regression for estimating the health effects of multi-pollutant mixtures

(2014) Jennifer F. Bobb et al.   BIOSTATISTICS

A large lung gene expression study identifying fibulin-5 as a novel player in tissue repair in COPD

(2014) Corry-Anke Brandsma et al.   THORAX

Peripheral Blood Mononuclear Cell Gene Expression in Chronic Obstructive Pulmonary Disease

(2013) Timothy M. Bahr et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Effects of long-term exposure to air pollution on natural-cause mortality: an analysis of 22 European cohorts within the multicentre ESCAPE project

(2013) Rob Beelen et al.   LANCET

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

Towards a knowledge-based Human Protein Atlas

(2010) Mathias Uhlen et al.   NATURE BIOTECHNOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Circadian Timing in the Lung; A Specific Role for Bronchiolar Epithelial Cells

(2008) J. E. Gibbs et al.   ENDOCRINOLOGY