Tree mycorrhizal type and tree diversity shape the forest soil microbiota

Tree diversity effects on ecosystem functioning–Introduction

(2021) Stefan Trogisch et al.   BASIC AND APPLIED ECOLOGY

How mycorrhizal associations drive plant population and community biology

(2020) Leho Tedersoo et al.   SCIENCE

Soil Microbial Biomass and Community Composition Relates to Poplar Genotypes and Environmental Conditions

(2020) Leszek Karliński et al.   Forests

Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed

(2020) Hyun Kim et al.   Microbiome

Plant nutrient‐acquisition strategies drive topsoil microbiome structure and function

(2020) Mohammad Bahram et al.   NEW PHYTOLOGIST

Using soil bacterial communities to predict physico-chemical variables and soil quality

(2020) Syrie M. Hermans et al.   Microbiome

Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe

(2020) Leho Tedersoo et al.   Frontiers in Microbiology

Species richness promotes ecosystem carbon storage: evidence from biodiversity-ecosystem functioning experiments

(2020) Shan Xu et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cross-Biome Drivers of Soil Bacterial Alpha Diversity on a Worldwide Scale

(2019) Manuel Delgado-Baquerizo et al.   ECOSYSTEMS

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

(2019) Stéphane Compant et al.   Journal of Advanced Research

Tree diversity is not always a strong driver of soil microbial diversity: a 7‐yr‐old diversity experiment with trees

(2019) Maxime Rivest et al.   Ecosphere

Mycorrhizal types differ in ecophysiology and alter plant nutrition and soil processes

(2019) Leho Tedersoo et al.   BIOLOGICAL REVIEWS

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

DNA- and RNA- Derived Fungal Communities in Subsurface Aquifers Only Partly Overlap but React Similarly to Environmental Factors

(2019) Ali Nawaz et al.   Microorganisms

Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems

(2019) Shuo Jiao et al.   ENVIRONMENTAL MICROBIOLOGY

Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands

(2019) Selma Vieira et al.   ISME Journal

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Linking Soil Fungal Generality to Tree Richness in Young Subtropical Chinese Forests

(2019) Christina Weißbecker et al.   Microorganisms

Interactions among decaying leaf litter, root litter and soil organic matter vary with mycorrhizal type

(2018) Luke M. Jacobs et al.   JOURNAL OF ECOLOGY

Evolutionary history of mycorrhizal symbioses and global host plant diversity

(2018) Mark C. Brundrett et al.   NEW PHYTOLOGIST

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Experimental Evidence of Functional Group-Dependent Effects of Tree Diversity on Soil Fungi in Subtropical Forests

(2018) Christina Weißbecker et al.   Frontiers in Microbiology

Land-Use Intensity Rather Than Plant Functional Identity Shapes Bacterial and Fungal Rhizosphere Communities

(2018) Ricardo Schöps et al.   Frontiers in Microbiology

Tree species identity surpasses richness in affecting soil microbial richness and community composition in subtropical forests

(2018) Liang Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cryptic biogeochemical cycles: unravelling hidden redox reactions

(2017) Andreas Kappler et al.   ENVIRONMENTAL MICROBIOLOGY

Preservation of nucleic acids by freeze-drying for next generation sequencing analyses of soil microbial communities

(2017) Christina Weißbecker et al.   Journal of Plant Ecology

Plant species richness and productivity determine the diversity of soil fungal guilds in temperate coniferous forest and bog habitats

(2017) Indrek Hiiesalu et al.   MOLECULAR ECOLOGY

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Maintaining connectivity: understanding the role of root order and mycelial networks in fine root decomposition of woody plants

(2017) Katilyn V. Beidler et al.   PLANT AND SOIL

Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics

(2017) Jonathan A. Bennett et al.   SCIENCE

Keystone microbial taxa regulate the invasion of a fungal pathogen in agro-ecosystems

(2017) P. Trivedi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant diversity represents the prevalent determinant of soil fungal community structure across temperate grasslands in northern China

(2017) Yong-Liang Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Preservation of nucleic acids by freeze-drying for next generation sequencing analyses of soil microbial communities

(2017) Christina Weißbecker et al.   Journal of Plant Ecology

Belowground top-down and aboveground bottom-up effects structure multitrophic community relationships in a biodiverse forest

(2017) Andreas Schuldt et al.   Scientific Reports

Root biomass and exudates link plant diversity with soil bacterial and fungal biomass

(2017) Nico Eisenhauer et al.   Scientific Reports

Mycorrhizal and saprotrophic fungal guilds compete for the same organic substrates but affect decomposition differently

(2016) Inga T. M. Bödeker et al.   FUNCTIONAL ECOLOGY

Relative importance of soil properties and microbial community for soil functionality: insights from a microbial swap experiment

(2016) Manuel Delgado-Baquerizo et al.   FUNCTIONAL ECOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Ectomycorrhizal fungal diversity and saprotrophic fungal diversity are linked to different tree community attributes in a field-based tree experiment

(2016) Nhu H. Nguyen et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Dominant mycorrhizal association of trees alters carbon and nutrient cycling by selecting for microbial groups with distinct enzyme function

(2016) Tanya E. Cheeke et al.   NEW PHYTOLOGIST

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest

(2015) Albert Barberán et al.   ECOLOGY LETTERS

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

(2015) Leho Tedersoo et al.   ISME Journal

Decay rates of leaf litters from arbuscular mycorrhizal trees are more sensitive to soil effects than litters from ectomycorrhizal trees

(2015) Meghan G. Midgley et al.   JOURNAL OF ECOLOGY

Interactions among roots, mycorrhizas and free-living microbial communities differentially impact soil carbon processes

(2015) Jessica A. M. Moore et al.   JOURNAL OF ECOLOGY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant diversity increases soil microbial activity and soil carbon storage

(2015) Markus Lange et al.   Nature Communications

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

Soil biota enhance agricultural sustainability by improving crop yield, nutrient uptake and reducing nitrogen leaching losses

(2014) S. Franz Bender et al.   JOURNAL OF APPLIED ECOLOGY

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Specificity of plant-microbe interactions in the tree mycorrhizosphere biome and consequences for soil C cycling

(2014) Carolyn Churchland et al.   Frontiers in Microbiology

Tree species identity has little impact on the structure of soil bacterial communities in a 10-year-old tropical tree plantation

(2013) Taiga Yamamura et al.   BIOLOGY AND FERTILITY OF SOILS

Where is positional uncertainty a problem for species distribution modelling?

(2013) Babak Naimi et al.   ECOGRAPHY

Establishment success in a forest biodiversity and ecosystem functioning experiment in subtropical China (BEF-China)

(2013) Xuefei Yang et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Strong coupling of plant and fungal community structure across western Amazonian rainforests

(2013) Kabir G Peay et al.   ISME Journal

Host plant genus-level diversity is the best predictor of ectomycorrhizal fungal diversity in a Chinese subtropical forest

(2013) Cheng Gao et al.   MOLECULAR ECOLOGY

The mycorrhizal-associated nutrient economy: a new framework for predicting carbon-nutrient couplings in temperate forests

(2013) Richard P. Phillips et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Designing forest biodiversity experiments: general considerations illustrated by a new large experiment in subtropical China

(2013) Helge Bruelheide et al.   Methods in Ecology and Evolution

A comprehensive evaluation of multicategory classification methods for microbiomic data

(2013) Alexander Statnikov et al.   Microbiome

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Mycorrhizal networks: Mechanisms, ecology and modelling

(2012) Suzanne W. Simard et al.   Fungal Biology Reviews

Fungal Community Composition in Neotropical Rain Forests: the Influence of Tree Diversity and Precipitation

(2011) Krista L. McGuire et al.   MICROBIAL ECOLOGY

Plant diversity effects on soil microorganisms support the singular hypothesis

(2010) N. Eisenhauer et al.   ECOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis

(2010) Paola Bonfante et al.   Nature Communications

Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions

(2009) Paola Bonfante et al.   Annual Review of Microbiology

Ascomycetes associated with ectomycorrhizas: molecular diversity and ecology with particular reference to theHelotiales

(2009) Leho Tedersoo et al.   ENVIRONMENTAL MICROBIOLOGY

Arbuscular mycorrhizal fungal community structures differ between co-occurring tree species of dry Afromontane tropical forest, and their seedlings exhibit potential to trap isolates suited for reforestation

(2009) Tesfaye Wubet et al.   MYCOLOGICAL PROGRESS

The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors

(2009) M. Buée et al.   PLANT AND SOIL

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Ecological aspects of mycorrhizal symbiosis: with special emphasis on the functional diversity of interactions involving the extraradical mycelium

(2008) R. D. Finlay   JOURNAL OF EXPERIMENTAL BOTANY