Campylobacterota dominate the microbial communities in a tropical karst subterranean estuary, with implications for cycling and export of nitrogen to coastal waters

Vertical Stratification of Sediment Microbial Communities Along Geochemical Gradients of a Subterranean Estuary Located at the Gloucester Beach of Virginia, United States

(2019) Yiguo Hong et al.   Frontiers in Microbiology

Organic matter quantity and quality across salinity gradients in conduit- vs. diffuse flow-dominated subterranean estuaries

(2019) Andrea J. Pain et al.   LIMNOLOGY AND OCEANOGRAPHY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru

(2019) Cameron M. Callbeck et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Carbon and phosphorus processing in a carbonate karst aquifer and delivery to the coastal ocean

(2019) Andrea J. Pain et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Sulfurovum denitrificans sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing epsilonproteobacterium isolated from a hydrothermal field

(2018) Koji Mori et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

(2018) David W. Waite et al.   Frontiers in Microbiology

Hydrologic Controls of Methane Dynamics in Karst Subterranean Estuaries

(2018) D. Brankovits et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Effects of short-term variations in sea level on dissolved oxygen in a coastal karst aquifer, Quintana Roo, Mexico

(2017) Caitlin Young et al.   LIMNOLOGY AND OCEANOGRAPHY

Cycling of redox-sensitive elements in a sandy subterranean estuary of the southern North Sea

(2017) Anja Reckhardt et al.   MARINE CHEMISTRY

Methane- and dissolved organic carbon-fueled microbial loop supports a tropical subterranean estuary ecosystem

(2017) D. Brankovits et al.   Nature Communications

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

(2017) David W. Waite et al.   Frontiers in Microbiology

Sulfurovum riftiae sp. nov., a mesophilic, thiosulfate-oxidizing, nitrate-reducing chemolithoautotrophic epsilonproteobacterium isolated from the tube of the deep-sea hydrothermal vent polychaete Riftia pachyptila

(2016) Donato Giovannelli et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Seasonal variability of saltwater intrusion at a point-source submarine groundwater discharge

(2016) Sabrina M. Parra et al.   LIMNOLOGY AND OCEANOGRAPHY

Periodic change in coastal microbial community structure associated with submarine groundwater discharge and tidal fluctuation

(2016) Eunhee Lee et al.   LIMNOLOGY AND OCEANOGRAPHY

Buccal Swabbing as a Noninvasive Method To Determine Bacterial, Archaeal, and Eukaryotic Microbial Community Structures in the Rumen

(2015) Sandra Kittelmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution, Activities, and Interactions of Methanogens and Sulfate-Reducing Prokaryotes in the Florida Everglades

(2015) Hee-Sung Bae et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamic hydrologic and biogeochemical processes drive microbially enhanced iron and sulfur cycling within the intertidal mixing zone of a beach aquifer

(2015) Sean M. McAllister et al.   LIMNOLOGY AND OCEANOGRAPHY

Benthic-pelagic coupling of nutrients and dissolved organic matter composition in an intertidal sandy beach

(2015) Michael Seidel et al.   MARINE CHEMISTRY

Salt intrusion at a submarine spring in a fringing reef lagoon

(2015) Sabrina M. Parra et al.   JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS

Refined NrfA Phylogeny Improves PCR-BasednrfAGene Detection

(2014) Allana Welsh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Composition and fluxes of submarine groundwater along the Caribbean coast of the Yucatan Peninsula

(2014) Kimberly A. Null et al.   CONTINENTAL SHELF RESEARCH

Links between sulphur oxidation and sulphur-oxidising bacteria abundance and diversity in soil microcosms based onsoxBfunctional gene analysis

(2014) Maria Tourna et al.   FEMS MICROBIOLOGY ECOLOGY

Trace element geochemistry of groundwater in a karst subterranean estuary (Yucatan Peninsula, Mexico)

(2014) Meagan Eagle Gonneea et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Global land–ocean linkage: direct inputs of nitrogen to coastal waters via submarine groundwater discharge

(2013) A H W Beusen et al.   Environmental Research Letters

Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids

(2013) Nancy H. Akerman et al.   Frontiers in Microbiology

Co-Occurring Anammox, Denitrification, and Codenitrification in Agricultural Soils

(2012) Andrew Long et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Review: The Yucatán Peninsula karst aquifer, Mexico

(2011) Peter Bauer-Gottwein et al.   HYDROGEOLOGY JOURNAL

Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones

(2011) J. Grote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental Factors Shape Sediment Anammox Bacterial Communities in Hypernutrified Jiaozhou Bay, China

(2010) H. Dang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel Microbial Diversity Retrieved by Autonomous Robotic Exploration of the World's Deepest Vertical Phreatic Sinkhole

(2010) Jason W. Sahl et al.   ASTROBIOLOGY

A comparative molecular analysis of water-filled limestone sinkholes in north-eastern Mexico

(2010) Jason W. Sahl et al.   ENVIRONMENTAL MICROBIOLOGY

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

(2010) D. E. Canfield et al.   SCIENCE

The Effect of Submarine Groundwater Discharge on the Ocean

(2009) Willard S. Moore   Annual Review of Marine Science

Microbial nitrogen cycling at the saltwater–freshwater interface

(2009) Alyson E. Santoro   HYDROGEOLOGY JOURNAL

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

(2009) P. Lam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary

(2008) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

(2008) Gaute Lavik et al.   NATURE

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE