A Comparison of Base-calling Algorithms for Illumina Sequencing Technology

BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution

(2014) C. Ye et al.   BIOINFORMATICS

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers

(2013) Gabriel Renaud et al.   BIOINFORMATICS

Base calling for high-throughput short-read sequencing: dynamic programming solutions

(2013) Shreepriya Das et al.   BMC BIOINFORMATICS

OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing

(2012) S. Das et al.   BIOINFORMATICS

ParticleCall: A particle filter for base calling in next-generation sequencing systems

(2012) Xiaohu Shen et al.   BMC BIOINFORMATICS

Efficient error correction for next-generation sequencing of viral amplicons

(2012) Pavel Skums et al.   BMC BIOINFORMATICS

All your base: a fast and accurate probabilistic approach to base calling

(2012) Tim Massingham et al.   GENOME BIOLOGY

TOTALRECALLER: improved accuracy and performance via integrated alignment and base-calling

(2011) F. Menges et al.   BIOINFORMATICS

Base-calling for next-generation sequencing platforms

(2011) C. Ledergerber et al.   BRIEFINGS IN BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing

(2009) W.-C. Kao et al.   GENOME RESEARCH

Probabilistic base calling of Solexa sequencing data

(2008) Jacques Rougemont et al.   BMC BIOINFORMATICS

Alta-Cyclic: a self-optimizing base caller for next-generation sequencing

(2008) Yaniv Erlich et al.   NATURE METHODS