How does molecular taxonomy for deriving river health indices correlate with traditional morphological taxonomy?

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems

(2019) Mehrdad Hajibabaei et al.   PLoS One

DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

(2019) Hannah Weigand et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Towards routine DNA metabarcoding of macroinvertebrates using bulk samples for freshwater bioassessment: Effects of debris and storage conditions on the recovery of target taxa

(2019) Susan J. Nichols et al.   FRESHWATER BIOLOGY

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples

(2019) Mehrdad Hajibabaei et al.   PLoS One

Analysis of 13,312 benthic invertebrate samples from German streams reveals minor deviations in ecological status class between abundance and presence/absence data

(2019) Dominik Buchner et al.   PLoS One

Identification guide to genera of aquatic larval Chironomidae (Diptera) of Australia and New Zealand

(2019) PETER S. CRANSTON   ZOOTAXA

Can high-throughput sequencing detect macroinvertebrate diversity for routine monitoring of an urban river?

(2018) Melissa E. Carew et al.   ECOLOGICAL INDICATORS

A DNA barcode database of Australia’s freshwater macroinvertebrate fauna

(2017) M. E. Carew et al.   MARINE AND FRESHWATER RESEARCH

Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding

(2017) Vasco Elbrecht et al.   Ecology and Evolution

DNA barcoding Australian macroinvertebrates for monitoring programs: benefits and current short comings

(2015) Michael Shackleton et al.   MARINE AND FRESHWATER RESEARCH

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Stream biomonitoring using macroinvertebrates around the globe: a comparison of large-scale programs

(2014) Daniel F. Buss et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Problematic barcoding in flatworms: A case-study on monogeneans and rhabdocoels (Platyhelminthes)

(2013) Maarten Vanhove et al.   ZooKeys

The puzzle of DNA sequences of Phytoseiidae (Acari�:�Mesostigmata) in the public GenBank database

(2012) Marie-Stéphane Tixier et al.   INVERTEBRATE SYSTEMATICS

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Phylogenetic signals and ecotoxicological responses: potential implications for aquatic biomonitoring

(2011) Melissa E. Carew et al.   ECOTOXICOLOGY

Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description

(2010) Paul Z. Goldstein et al.   BIOESSAYS

Using the reference condition maintains the integrity of a bioassessment program in a changing climate

(2010) Susan J. Nichols et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

The Sustainable Rivers Audit: assessing river ecosystem health in the Murray–Darling Basin, Australia

(2010) P. E. Davies et al.   MARINE AND FRESHWATER RESEARCH

A universal DNA mini-barcode for biodiversity analysis

(2008) Isabelle Meusnier et al.   BMC GENOMICS

Factors affecting detectability of prey DNA in the gut contents of invertebrate predators: a polymerase chain reaction-based method

(2008) Reza Hosseini et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Can macroinvertebrate rapid bioassessment methods be used to assess river health during drought in south eastern Australian streams?

(2008) PETER ROSE et al.   FRESHWATER BIOLOGY

Rapid biological assessment charts the recovery of stream macroinvertebrate assemblages after sewage discharges cease

(2007) Colin H. Besley et al.   ECOLOGICAL INDICATORS