Article
Cell Biology
Masayuki Yamagishi, Taoruo Huang, Akiko Hozumi, Takeshi A. Onuma, Yasunori Sasakura, Michio Ogasawara
Summary: This study investigates the shared and/or divergent features of a complex ascidian endostyle by knocking out the Ciona Nkx2-1 and FoxE genes. The results show that these gene knockouts have different effects on the morphology of the developing endostyle.
CELL AND TISSUE RESEARCH
(2022)
Article
Biology
Wataru Takagi, Fumiaki Sugahara, Shinnosuke Higuchi, Rie Kusakabe, Juan Pascual-Anaya, Iori Sato, Yasuhiro Oisi, Nobuhiro Ogawa, Hiroshi Miyanishi, Noritaka Adachi, Susumu Hyodo, Shigeru Kuratani
Summary: The thyroid gland in hagfish develops directly from the ventrorostral pharyngeal endoderm, contradicting previous findings of an endostyle-like primordium. The developmental pattern and gene expression profiles of hagfish thyroid closely resemble those found in modern jawed vertebrates. Unlike jawed vertebrates, but similar to non-vertebrate chordates, lamprey and hagfish share a broad expression domain of a key regulatory gene in the pharyngeal epithelium during early development.
Article
Multidisciplinary Sciences
Shin Matsubara, Tomohiro Osugi, Akira Shiraishi, Azumi Wada, Honoo Satake
Summary: This study identified organ-specific genes in 9 adult tissues of an ascidian and compared their expression patterns to homologous genes in vertebrates using RNA-seq and qRT-PCR. The results revealed both evolutionary conservation and divergence in organ development between Ciona intestinalis and vertebrates.
Article
Cell Biology
Alfonso Esposito, Luca Ambrosino, Silvano Piazza, Salvatore D'Aniello, Maria Luisa Chiusano, Annamaria Locascio
Summary: This study investigates the presence of thyroid-related proteins in non-vertebrate and vertebrate chordates and determines the conservation and divergence of functional domains at the protein level. The findings support the hypothesis that non-vertebrate chordates have a functional thyroid hormone signaling system and provide insights into its possible evolutionary adaptation.
Article
Cell Biology
Josep Marti-Solans, Hector Godoy-Marin, Miriam Diaz-Gracia, Takeshi A. Onuma, Hiroki Nishida, Ricard Albalat, Cristian Canestro
Summary: Gene loss is a common source of genetic variation influencing species evolvability, biodiversity, and evolutionary adaptations. This study focuses on the evolution of the Wnt family in the appendicularian tunicate Oikopleura dioica, revealing three main evolutionary patterns of gene loss. The findings suggest a more radical evolutionary pattern in O. dioica compared to other chordates, expanding the boundaries of Wnt family evolution malleability.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Anthony Leon, Lucie Subirana, Kevin Magre, Ildefonso Cases, Juan J. Tena, Manuel Irimia, Jose Luis Gomez-Skarmeta, Hector Escriva, Stephanie Bertrand
Summary: Neurons are specialized cells found only in metazoans. How pluripotent ectodermal cells are directed towards neural or epidermal fates is an open question. This study used micromere explants to investigate the gene regulatory networks underlying the formation of the central nervous system and epidermis in the cephalochordate amphioxus.
MOLECULAR BIOLOGY AND EVOLUTION
(2022)
Article
Cell Biology
Tal Gordon, Arnav Kumar Upadhyay, Lucia Manni, Dorothee Huchon, Noa Shenkar
Summary: The study highlights the extraordinary regeneration abilities of the solitary ascidian Polycarpa mytiligera, which can completely regenerate into independent individuals. The evolutionary proximity to colonial species suggests regeneration ability as an exaptation feature for colonial lifestyle. The findings emphasize the potential of P. mytiligera as a new comparative system for studying the evolution of regeneration and coloniality among chordates.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Article
Anatomy & Morphology
Dandan Yi, Yiminu'er Yilihamu, Chaoyu Jiang, Ru Wang, Xingyi Lu, Jianfeng Sang, Lei Su
Summary: This study found that MTHFD1L is highly expressed in papillary thyroid cancer. Knockdown of MTHFD1L can inhibit cell growth and induce apoptosis. MTHFD1L knockdown also reduces the expression levels of Notch2, Hes1 CCND1, Bcl-2, and PCNA proteins.
Article
Multidisciplinary Sciences
Aline Chessel, Noemie De Croze, Maria Dolores Molina, Laura Taberner, Philippe Dru, Luc Martin, Thierry Lepage
Summary: During early development of the sea urchin embryo, ERK signalling is activated in mesodermal precursors through a cell-autonomous mechanism involving the transcriptional activation of the gene encoding KSR3. KSR3 is an allosteric activator of RAF and can activate ERK signalling independently of RAS in non-chordate metazoa. The findings provide insights into the evolution and co-option of the ERK signalling pathway.
NATURE COMMUNICATIONS
(2023)
Article
Multidisciplinary Sciences
Alfonso Ferrandez-Roldan, Marc Fabrega-Torrus, Gaspar Sanchez-Serna, Enya Duran-Bello, Marti Joaquin-Lluis, Paula Bujosa, Marcos Plana-Carmona, Jordi Garcia-Fernandez, Ricard Albalat, Cristian Canestro
Summary: The evolution of the appendicularian heart involved significant ancestral losses of cardiopharyngeal genes, leading to the deconstruction of the gene regulatory network and supporting a scenario where ancestral tunicates had a sessile ascidian-like adult lifestyle. These changes contributed to the acceleration of cardiogenesis and the redesign of the heart structure in appendicularians during their transition to a complete pelagic free-living style.
Article
Biology
An Jiang, Wei Zhang, Jiankai Wei, Penghui Liu, Bo Dong
Summary: The formation of complex organs in evolution has always been a fascinating topic. The prototype of complex organs likely existed in ancient evolutionary lineages. In certain sister groups to vertebrates, like cephalochordates and urochordates, a specialized pharyngeal organ called the endostyle is uniquely found. This organ is involved in filter-feeding and thyroid hormone synthesis, and can be considered a prototype of the thyroid gland. The comprehensive analysis of the endostyle in the ascidian Styela clava revealed its function as a thyroid and parathyroid gland, as well as its correlation with other organs like the head kidney and bone marrow in advanced vertebrates.
Article
Evolutionary Biology
Luis Alfonso Yanez Guerra, Meet Zandawala
Summary: In this study, the GnRH and CRZ signaling systems were identified and characterized in the amphioxus Branchiostoma floridae. The discovery of these systems in a close relative of vertebrates provides insight into their roles during the transition from invertebrates to vertebrates.
GENOME BIOLOGY AND EVOLUTION
(2023)
Article
Biochemistry & Molecular Biology
Takafumi Kawai, Masaki Hashimoto, Natsuki Eguchi, Junko M. Nishino, Yuka Jinno, Risa Mori-Kreiner, Mans Aspaker, Daijiro Chiba, Yukio Ohtsuka, Akira Kawanabe, Atsuo S. Nishino, Yasushi Okamura
Summary: Voltage-gated sodium channels (Nav1s) are crucial for action potential generation and propagation in neurons, muscles, and endocrine cells. They are targeted by various drugs and mutations in Nav1 genes can lead to human disorders. While the basic properties of Nav1s were initially studied in invertebrates, attempts at expressing Nav1s from marine invertebrates heterologously have been unsuccessful.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2021)
Article
Dermatology
Leila Youssefian, Fatemeh Niaziorimi, Amir Hossein Saeidian, Andrew P. South, Farzaneh Khosravi-Bachehmir, Sadegh Khodavaisy, Hassan Vahidnezhad, Jouni Uitto
Summary: The study presents clinical and molecular characteristics of 19 patients with autosomal recessive congenital ichthyosis, showing an association with SDR9C7 gene mutation. Downregulation of SDR9C7 expression using RNA technique in skin constructs revealed morphological and histological abnormalities ex vivo. The results suggest that deficiency of SDR9C7 alone is sufficient to disrupt epidermal barrier function leading to ichthyosis.
JOURNAL OF INVESTIGATIVE DERMATOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Sara Calatayud, Mario Garcia-Risco, Oscar Palacios, Merce Capdevila, Cristian Canestro, Ricard Albalat
Summary: The study focused on the evolution of metallothioneins (MTs), revealing significant structural and functional differences among different types of MTs, suggesting a complex evolutionary history of chordate MTs.
MOLECULAR BIOLOGY AND EVOLUTION
(2021)
Article
Biochemistry & Molecular Biology
Justine Dardaillon, Delphine Dauga, Paul Simion, Emmanuel Faure, Takeshi A. Onuma, Melissa B. DeBiasse, Alexandra Louis, Kazuhiro R. Nitta, Magali Naville, Lydia Besnardeau, Wendy Reeves, Kai Wang, Marie Fagotto, Marion Gueroult-Bellone, Shigeki Fujiwara, Remi Dumollard, Michael Veeman, Jean-Nicolas Volff, Hugues Roest Crollius, Emmanuel Douzery, Joseph F. Ryan, Bradley Davidson, Hiroki Nishida, Christelle Dantec, Patrick Lemaire
NUCLEIC ACIDS RESEARCH
(2020)
Article
Multidisciplinary Sciences
Takeshi A. Onuma, Momoko Hayashi, Fuki Gyoja, Kanae Kishi, Kai Wang, Hiroki Nishida
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2020)
Article
Cell Biology
Ryo Morita, Takeshi A. Onuma, Lucia Manni, Nobuhiko Ohno, Hiroki Nishida
DEVELOPMENT GENES AND EVOLUTION
(2020)
Review
Cell Biology
Takeshi A. Onuma, Hiroki Nishida
Summary: The larvacean Oikopleura dioica, a cosmopolitan planktonic chordate closely related to vertebrates, has a tadpole-shaped morphology, short life cycle, compact genome, small number of cells, invariant embryonic cell lineages, and fast development. It serves as a promising animal model for genetic manipulation and has been used in studies involving genome and transcriptomes, functional genetic knockdown techniques, and live imaging of embryos and larvae, providing insights into development and evolution in chordates.
DEVELOPMENT GROWTH & DIFFERENTIATION
(2022)
Article
Marine & Freshwater Biology
Aki Masunaga, Michael J. Mansfield, Yongkai Tan, Andrew W. Liu, Aleksandra Bliznina, Paolo Barzaghi, Tamara L. Hodgetts, Alfonso Ferrandez-Roldan, Cristian Canestro, Takeshi A. Onuma, Charles Plessy, Nicholas M. Luscombe
Summary: Despite their morphological similarities, O. dioica specimens actually form three genetic clades, indicating the existence of multiple cryptic species. This finding highlights the genetic diversity and complexity of O. dioica population structures, as well as the importance of accurate species identification for understanding biodiversity.
Article
Cell Biology
Misako Konishi, Kanae Kishi, Ryo Morita, Atsuko Yamada, Takeshi A. Onuma, Hiroki Nishida
Summary: Stem cell division plays a crucial role in generating different cell types during animal development, particularly in the formation of neural cells in the nervous system. The study discovered that reiterated unequal stem cell divisions are involved in the development of the brain in larvaceans. This is the first evidence of this type of stem cell division during brain formation in non-vertebrate deuterostomes.
DEVELOPMENT GENES AND EVOLUTION
(2023)
Review
Developmental Biology
Cheng Shi, Pengfei Jiao, Zhiyi Chen, Lan Ma, Siyue Yao
Summary: This review discusses the molecular etiology of congenital craniofacial abnormalities, with a focus on the role and mechanism of noncoding RNAs in regulating craniofacial development. Aberrant expression of noncoding RNAs has been implicated in the pathogenesis of craniofacial abnormalities, providing potential therapeutic targets.
DEVELOPMENTAL BIOLOGY
(2024)
Article
Developmental Biology
Hideru Togashi, Steven Ray Davis, Makoto Sato
Summary: Tile patterns, regulated by cell adhesion molecules, are regular arrangements of cells that play important functional roles in multicellular organisms. The physical constraints and cell adhesion regulate both cell shape and tissue morphogenesis.
DEVELOPMENTAL BIOLOGY
(2024)
Article
Developmental Biology
Armen Khanbabei, Lina Segura, Cynthia Petrossian, Aaron Lemus, Ithan Cano, Courtney Frazier, Armen Halajyan, Donnie Ca, Mariano Loza-Coll
Summary: This article investigates the genetic regulatory mechanisms of Drosophila intestinal stem cells. The study found that most target genes co-regulated by Esg and STAT show a consistent gene expression pattern. However, manipulating these validated targets in vivo rarely replicated the effects of manipulating Esg and STAT, suggesting the presence of complex genetic interactions among the downstream targets of these two master regulator genes.
DEVELOPMENTAL BIOLOGY
(2024)
Article
Developmental Biology
Bayley J. Waters, Zoe R. Birman, Matthew R. Wagner, Julia Lemanski, Barak Blum
Summary: Researchers found that conditional deletion of Robo2 in adult mice led to a significant loss of islet architecture without affecting beta cell identity or function, suggesting that Robo2 plays a role in actively maintaining adult islet architecture. Understanding the factors required for islet architecture maintenance is crucial for developing future diabetes therapies.
DEVELOPMENTAL BIOLOGY
(2024)
Article
Developmental Biology
Rhiannon Clements, Tyler Smith, Luke Cowart, Jennifer Zhumi, Alan Sherrod, Aidan Cahill, Ginger L. Hunter
Summary: Cell protrusions play a crucial role in regulating cell activities during development. By studying the regulation mechanism in fruit fly sensory bristle patterning, it was found that Myosin XV is essential for the dynamics of signaling filopodia and promotes long-range Notch signaling.
DEVELOPMENTAL BIOLOGY
(2024)
Article
Developmental Biology
Margaret Keating, Ryan Hagle, Daniel Osorio-Mendez, Anjelica Rodriguez-Parks, Sarah I. Almutawa, Junsu Kang
Summary: Knock-in reporter (KI) animals are essential for studying gene expression in biomedical research. This study developed a new strategy using minicircle technology and a minimal promoter to enhance knock-in events and establish stable KI transgenic reporter lines. The study also highlighted the importance of selecting the proper KI line due to potential inappropriate influence of genome editing on reporter gene expression.
DEVELOPMENTAL BIOLOGY
(2024)
Article
Developmental Biology
Christian Altbuerger, Meta Rath, Daniel Armbruster, Wolfgang Driever
Summary: This study reveals that Neurog1 and Olig2 transcription factors have differential requirements for the development of dopaminergic neurons, and they integrate local patterning signals and Notch neurogenic selection signaling to specify the progenitor population and initiate neurogenesis and differentiation.
DEVELOPMENTAL BIOLOGY
(2024)