TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning

TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning

(2021) Fernando Pérez-García et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Test-time augmentation for deep learning-based cell segmentation on microscopy images

(2020) Nikita Moshkov et al.   Scientific Reports

pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis

(2020) Alain Jungo et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation

(2020) Fabian Isensee et al.   NATURE METHODS

Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks

(2019) Guotai Wang et al.   NEUROCOMPUTING

Convolutional neural networks for skull-stripping in brain MR imaging using silver standard masks

(2019) Oeslle Lucena et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

The effects of physics‐based data augmentation on the generalizability of deep neural networks: Demonstration on nodule false‐positive reduction

(2019) Akinyinka O. Omigbodun et al.   MEDICAL PHYSICS

Self-supervised learning for medical image analysis using image context restoration

(2019) Liang Chen et al.   MEDICAL IMAGE ANALYSIS

NiftyNet: a deep-learning platform for medical imaging

(2018) Eli Gibson et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Multimodal and Multiscale Deep Neural Networks for the Early Diagnosis of Alzheimer’s Disease using structural MR and FDG-PET images

(2018) Donghuan Lu et al.   Scientific Reports

Variable-Density Single-Shot Fast Spin-Echo MRI with Deep Learning Reconstruction by Using Variational Networks

(2018) Feiyu Chen et al.   RADIOLOGY

Longitudinal segmentation of age-related white matter hyperintensities

(2017) Carole H. Sudre et al.   MEDICAL IMAGE ANALYSIS

Geodesic Information Flows: Spatially-Variant Graphs and Their Application to Segmentation and Fusion

(2015) M. Jorge Cardoso et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Medical Image File Formats

(2013) Michele Larobina et al.   JOURNAL OF DIGITAL IMAGING

The Design of SimpleITK

(2013) Bradley C. Lowekamp et al.   Frontiers in Neuroinformatics

3D Slicer as an image computing platform for the Quantitative Imaging Network

(2012) Andriy Fedorov et al.   MAGNETIC RESONANCE IMAGING

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING