Integrated analysis of transcriptomic and metabolomic data to evaluate responses to hypersalinity stress in the gill of the razor clam (Sinonovacula constricta)

Targeting BCL-2 proteins in pediatric cancer: Dual inhibition of BCL-XL and MCL-1 leads to rapid induction of intrinsic apoptosis

(2020) Sarah Kehr et al.   CANCER LETTERS

Bioenergetic shift and actin cytoskeleton remodelling as acute vascular adaptive mechanisms to angiotensin II in murine retina and ophthalmic artery

(2020) Natarajan Perumal et al.   Redox Biology

Transcriptome analysis of liver lipid metabolism disorders of the turbot Scophthalmus maximus in response to low salinity stress

(2020) Zhifeng Liu et al.   AQUACULTURE

Hypoxia induces actin cytoskeleton remodeling by regulating the binding of CAPZA1 to F-actin via PIP2 to drive EMT in hepatocellular carcinoma

(2019) Deng Huang et al.   CANCER LETTERS

Transcriptome and Gene Coexpression Network Analyses of Two Wild Populations Provides Insight into the High-Salinity Adaptation Mechanisms of Crassostrea ariakensis

(2019) A. Xingyu Liu et al.   MARINE BIOTECHNOLOGY

Two I84 family protease inhibitors from Chinese razor clams Sinonovacula constricta expressed in response to environmental challenges

(2018) Xiarong Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Identification of immune-related genes in gill cells of Japanese eels ( Anguilla japonica ) in adaptation to water salinity changes

(2018) Jie Gu et al.   FISH & SHELLFISH IMMUNOLOGY

Compatible osmolytes modulate mitochondrial function in a marine osmoconformer Crassostrea gigas (Thunberg, 1793)

(2018) Eugene P. Sokolov et al.   MITOCHONDRION

Population resequencing reveals candidate genes associated with salinity adaptation of the Pacific oyster Crassostrea gigas

(2018) Zhicai She et al.   Scientific Reports

Chemical and biological transfer: Which one is responsible for the maternal transfer toxicity of tris(1,3-dichloro-2-propyl) phosphate in zebrafish?

(2018) Yongkang Zhang et al.   ENVIRONMENTAL POLLUTION

Analysis of in situ Transcriptomes Reveals Divergent Adaptive Response to Hyper- and Hypo-Salinity in the Hong Kong Oyster, Crassostrea hongkongensis

(2018) Shu Xiao et al.   Frontiers in Physiology

Interactive effects of osmotic stress and burrowing activity on protein metabolism and muscle capacity in the soft shell clam Mya arenaria

(2018) Fouzia Haider et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Salinity tolerance of a rare and endangered unionid mussel, Popenaias popeii (Texas Hornshell) and its implications for conservation and water management

(2018) Michael A. Hart et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Gill transcriptomes reveal involvement of cytoskeleton remodeling and immune defense in ammonia stress response in the banana shrimp Fenneropenaeus merguiensis

(2017) Wei Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Proximate, amino acid and lipid compositions in Sinonovacula constricta (Lamarck) reared at different salinities

(2017) Zhaoshou Ran et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

From basic apoptosis discoveries to advanced selective BCL-2 family inhibitors

(2017) Avi Ashkenazi et al.   NATURE REVIEWS DRUG DISCOVERY

Novel metabolic and physiological functions of branched chain amino acids: a review

(2017) Shihai Zhang et al.   Journal of Animal Science and Biotechnology

The importance of ribosome production, and the 5S RNP-MDM2 pathway, in health and disease

(2016) A. Pelava et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Transcriptional and metabolomic characterization of spontaneous metabolic cycles in Mytilus californianus under subtidal conditions

(2016) Andrew Y. Gracey et al.   Marine Genomics

Integrated application of transcriptomics and metabolomics yields insights into population-asynchronous ovary development in Coilia nasus

(2016) Gangchun Xu et al.   Scientific Reports

Transcriptomic and metabolomic data integration

(2015) Rachel Cavill et al.   BRIEFINGS IN BIOINFORMATICS

Neurotoxicological effects on marine mussel Mytilus galloprovincialis caged at petrochemical contaminated areas (eastern Sicily, Italy): 1H NMR and immunohistochemical assays

(2015) Tiziana Cappello et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Effects on the metabolism, growth, digestive capacity and osmoregulation of juvenile of Sub-Antarctic Notothenioid fish Eleginops maclovinus acclimated at different salinities

(2015) L. Vargas-Chacoff et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Mammalian CSAD and GADL1 have distinct biochemical properties and patterns of brain expression

(2015) Ingeborg Winge et al.   NEUROCHEMISTRY INTERNATIONAL

Massive expansion and functional divergence of innate immune genes in a protostome

(2015) Linlin Zhang et al.   Scientific Reports

Identification, expression, and responses to bacterial challenge of the cathepsin C gene from the razor clam Sinonovacula constricta

(2014) Donghong Niu et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Evolutionary responses of innate immunity to adaptive immunity

(2014) Amanda E. Ward et al.   INFECTION GENETICS AND EVOLUTION

Basics of mass spectrometry based metabolomics

(2014) Frédérique Courant et al.   PROTEOMICS

Molecular characterization and expression analysis of four cathepsin L genes in the razor clam, Sinonovacula constricta

(2013) Donghong Niu et al.   FISH & SHELLFISH IMMUNOLOGY

Changes in the transcriptional expression of oxidative stress response genes in Akoya pearl oysters (Pinctada fucata) exposed to air and mechanical agitation

(2012) Rhiannon P. Kuchel et al.   AQUACULTURE

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

(2011) Warwick B Dunn et al.   Nature Protocols

Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus)

(2010) BRENT L. LOCKWOOD et al.   MOLECULAR ECOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

β-Alanine as a small molecule neurotransmitter

(2010) K.E. Tiedje et al.   NEUROCHEMISTRY INTERNATIONAL

Identifying Health Impacts of Exposure to Copper Using Transcriptomics and Metabolomics in a Fish Model

(2009) Eduarda M. Santos et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Regulation of poly(ADP-ribose) polymerase-1 functions by leukocyte elastase inhibitor/LEI-derived DNase II during caspase-independent apoptosis

(2008) C. Leprêtre et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

(2008) Martina Proell et al.   PLoS One

Phagocytosis-induced apoptosis of macrophages is linked to uptake, killing and degradation of bacteria

(2007) Tobias Frankenberg et al.   EUROPEAN JOURNAL OF IMMUNOLOGY