Application of artificial intelligence for detection of chemico-biological interactions associated with oxidative stress and DNA damage

Artificial Intelligence in Drug Discovery: A Comprehensive Review of Data-driven and Machine Learning Approaches

(2021) Hyunho Kim et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

Convolutional and recurrent neural networks for the detection of valvular heart diseases in phonocardiogram recordings

(2021) Mohanad Alkhodari et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

The Relevance of Noncoding DNA Variations of Paraoxonase Gene Cluster in Atherosclerosis-Related Diseases

(2021) Anna Wysocka et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Oxidative stress-induced DNA damage and repair in primary human osteoarthritis chondrocytes: focus on IKKα and the DNA Mismatch Repair System

(2021) Simona Neri et al.   FREE RADICAL BIOLOGY AND MEDICINE

Neuron type classification in rat brain based on integrative convolutional and tree-based recurrent neural networks

(2021) Tielin Zhang et al.   Scientific Reports

Evaluation of machine learning models for automatic detection of DNA double strand breaks after irradiation using a γH2AX foci assay

(2020) Tim Hohmann et al.   PLoS One

Machine learning approaches to drug response prediction: challenges and recent progress

(2020) George Adam et al.   npj Precision Oncology

Artificial intelligence and machine learning in orthopedic surgery: a systematic review protocol

(2020) Nicola Maffulli et al.   Journal of Orthopaedic Surgery and Research

Machine Learning Model for Identifying Antioxidant Proteins Using Features Calculated from Primary Sequences

(2020) Luu Ho Thanh Lam et al.   Biology-Basel

Towards deep phenotyping pregnancy: a systematic review on artificial intelligence and machine learning methods to improve pregnancy outcomes

(2020) Lena Davidson et al.   BRIEFINGS IN BIOINFORMATICS

Inflammation response, oxidative stress and DNA damage caused by urban air pollution exposure increase in the lack of DNA repair XPC protein

(2020) Nilmara de Oliveira Alves et al.   ENVIRONMENT INTERNATIONAL

Long non-coding RNA nuclear paraspeckle assembly transcript 1 protects human lens epithelial cells against H2O2 stimuli through the nuclear factor kappa b/p65 and p38/mitogen-activated protein kinase axis

(2020) Tianqiu Zhou et al.   Annals of Translational Medicine

WekaDeeplearning4j: A deep learning package for Weka based on Deeplearning4j

(2019) Steven Lang et al.   KNOWLEDGE-BASED SYSTEMS

The Use of Single-Cell Comet Assay on Oral Cells: A Critical Review

(2019) ANA CAROLINA FLYGARE SOUZA et al.   ANTICANCER RESEARCH

Prediction of antioxidant proteins by incorporating statistical moments based features into Chou's PseAAC

(2019) Ahmad Hassan Butt et al.   JOURNAL OF THEORETICAL BIOLOGY

The protective function of non-coding DNA in DNA damage accumulation with age and its roles in age-related diseases

(2019) Guo-Hua Qiu et al.   BIOGERONTOLOGY

MLH1 deficiency leads to deregulated mitochondrial metabolism

(2019) Sukaina Rashid et al.   Cell Death & Disease

Label-free surface-enhanced Raman spectroscopy with artificial neural network technique for recognition photoinduced DNA damage

(2019) O. Guselnikova et al.   BIOSENSORS & BIOELECTRONICS

Classification of DNA damages on segmented comet assay images using convolutional neural network

(2019) Ümit Atila et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

(2018) Zhen Chen et al.   BIOINFORMATICS

SeqSVM: A Sequence-Based Support Vector Machine Method for Identifying Antioxidant Proteins

(2018) Lei Xu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Prediction and characterization of human ageing-related proteins by using machine learning

(2018) Csaba Kerepesi et al.   Scientific Reports

Ionizing Radiation-Induced Cellular Senescence in Normal, Non-transformed Cells and the Involved DNA Damage Response: A Mini Review

(2018) Mengqian Li et al.   Frontiers in Pharmacology

Postnatal Developmental Changes in Fractal Complexity of Giemsa-Stained Chromatin in Mice Spleen Follicular Cells

(2017) Igor Pantic et al.   MICROSCOPY AND MICROANALYSIS

AOD: the antioxidant protein database

(2017) Pengmian Feng et al.   Scientific Reports

Age-related reduction of chromatin fractal dimension in toluidine blue – stained hepatocytes

(2016) Igor Pantic et al.   MECHANISMS OF AGEING AND DEVELOPMENT

A novel features ranking metric with application to scalable visual and bioinformatics data classification

(2016) Quan Zou et al.   NEUROCOMPUTING

DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences

(2016) Daniel Quang et al.   NUCLEIC ACIDS RESEARCH

Wavelet transform analysis of chromatin texture changes during heat shock

(2015) G. HERBOMEL et al.   JOURNAL OF MICROSCOPY

Protection of the genome and central protein-coding sequences by non-coding DNA against DNA damage from radiation

(2015) Guo-Hua Qiu   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

A method to predict the impact of regulatory variants from DNA sequence

(2015) Dongwon Lee et al.   NATURE GENETICS

Predicting effects of noncoding variants with deep learning–based sequence model

(2015) Jian Zhou et al.   NATURE METHODS

Identifying Antioxidant Proteins by Using Optimal Dipeptide Compositions

(2015) Pengmian Feng et al.   Interdisciplinary Sciences-Computational Life Sciences

Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features

(2014) Mahmoud Ghandi et al.   PLoS Computational Biology

Identification of Antioxidants from Sequence Information Using Naïve Bayes

(2013) Peng-Mian Feng et al.   Computational and Mathematical Methods in Medicine

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Prediction of replication origins by calculating DNA structural properties

(2012) Wei Chen et al.   FEBS LETTERS

Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions

(2012) Chen Ding et al.   Journal of Proteomics

Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates

(2012) Gregory Hannum et al.   MOLECULAR CELL

Exploiting three kinds of interface propensities to identify protein binding sites

(2009) Bin Liu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY